{21} All Closed Tickets by Milestone (1152 matches)

This report shows how to color results by priority, while grouping results by milestone.

Last modification time, description and reporter are included as hidden fields for useful RSS export.

Release

Ticket Summary Reporter Component Priority Type Owner Created
#53 Create a jakarta commons config singleton for use by all jars and web-apps pradeep infrastructure high task pradeep 06/01/06
#55 XACML extension function for ITQL queries pradeep infrastructure high task pradeep 06/01/06
#60 Add an RDF get/set mechanism to Annotation service. pradeep topaz high task pradeep 06/01/06
#76 Provide a way to specify character encoding of annotation content body instead of assuming "utf-8" pradeep topaz high defect pradeep 07/03/06
#81 annotation type string is incorrect stevec topaz high defect pradeep 07/07/06
#226 Need to take a look at Tupelo amit topaz high task amit 11/27/06
#280 tried to delete an article on single box staging server using our wiki instructions. breakage. russ topaz critical defect ebrown 02/15/07
#281 admin page broken on multibox dev server russ topaz-mulgara high task ronald 02/15/07
#286 annotated.groovy is dumping article categories instead of article title russ topaz medium defect ebrown 02/16/07
#403 site error/access denied on adminTop.action russ ambra low defect russ 06/18/07
#436 browse broken on production servers russ topaz critical defect russ 07/03/07
#507 mulgara warning on startup russ topaz-mulgara low clarification ronald 07/27/07
#508 errors and warnings in plosone log russ ambra medium clarification russ 07/27/07
#518 The PLoS web site could be speeded up using common best practices jsuttor ambra high clarification 08/01/07
#530 is there any way to restrict third party servers from authenticating against our CAS store? russ ambra-sso unassigned clarification rich 08/07/07
#532 let CAS grantingTicket timeout to 1 day russ ambra medium task russ 08/08/07
#533 will we require a separate server for clinical trials? russ ambra high clarification jsuttor 08/08/07
#535 let's change email separator to comma on 'mail this article' page russ ambra medium enhancement amit 08/10/07
#538 Text for copyright statement associated with PLoS feeds in the publishing applicaiton. amit legal critical task rich 08/13/07
#540 move deny-apim-if-not-localhost.xml fedora settings into /etc/topaz or /etc/topaz/fedora.fcfg russ topaz-fedora medium enhancement amit 08/13/07
#545 standardize journal template path russ ambra medium enhancement russ 08/14/07
#547 roll back ingest if crossref file generation fails stevec ambra unassigned unassigned stevec 08/14/07
#550 articles left in inconsistent state on some ingest errors russ ambra low defect jsuttor 08/15/07
#551 what images are created on ingest russ ambra medium clarification russ 08/15/07
#552 if query field is left blank, search results are not templated russ ambra low defect jsuttor 08/15/07
#564 browse by subject pages should include the main feed as well as the subject feed in the <head> section russ ambra low enhancement russ 08/17/07
#565 browse pages should have a feedicon and link to the feed as well as a feed link in <head> russ ambra medium enhancement russ 08/17/07
#582 clinical trials 503.html img src must be filesystem path russ ambra medium defect russ 08/20/07
#583 Figure out how to bump the rpm version with SNAPSHOT builds ebrown build-system unassigned task amit 08/21/07
#584 virtual journal admin page broken russ ambra critical defect russ 08/21/07
#591 warnings on fedora startup about fedora ip address russ topaz-fedora medium clarification ebrown 08/22/07
#608 login link from article page is bad russ ambra critical defect jsuttor 08/24/07
#610 on article delete, remove relevant cache keys and and remove article from any collections (journal or issue) it belongs to russ ambra medium task alex 08/24/07
#611 pctr article does not show up on clinical trials browse list russ ambra critical defect jsuttor 08/24/07
#613 trackback problems russ ambra high defect jsuttor 08/24/07
#616 error in runitql on delete russ topaz-mulgara medium defect ronald 08/27/07
#620 cas error in r3575 russ build-system low defect 08/28/07
#626 annotation entries in mulgara changed when article ids went from ints to GUIDs russ ambra medium clarification jsuttor 08/29/07
#630 Masthead questions stoomey information-model high enhancement rich 09/05/07
#633 XSLT and CSS modification to accomodate different list styles susanne ambra medium enhancement alex 09/11/07
#634 admin application behavior on virtual journals russ ambra medium clarification jsuttor 09/12/07
#636 problems migratiing stage databases to live for testing russ topaz-mulgara critical clarification ronald 09/13/07
#639 add 'check all' check box on admin page russ ambra medium enhancement jsuttor 09/18/07
#640 annotations in the paragraphs following equations are placed incorrectly russ ambra high defect josowski 09/18/07
#642 doi-redirector broken in r3714 russ ambra medium defect russ 09/18/07
#643 where to set the journal name in "published in <journal name>" link? russ ambra high clarification amit 09/18/07
#646 is the <rules><plosJournal> element necessary in virtual journals set up? russ ambra high clarification russ 09/19/07
#647 after migration on stage, createjournal.groovy fails with errors russ ambra critical defect jsuttor 09/19/07
#648 Error Deleting Parent Annotation rich ambra medium defect 09/19/07
#657 we should be checking that the parameter is absolute before even sending to mulgara russ ambra medium clarification russ 09/24/07
#658 deleting an unpublished article should not clear browse cache russ ambra low enhancement jsuttor 09/24/07
#659 error when clicking back to 'recently published' block on home page russ ambra critical defect russ 09/24/07
#660 objects attached to plosone article fail to load when viewed for first time in clinical trials context russ ambra critical defect ronald 09/24/07
#662 live site hung around midnight pacific time russ topaz-mulgara high clarification russ 09/25/07
#663 Unable to find required classes rich ambra unassigned unassigned jsuttor 09/25/07
#666 cas problems with no webhead russ ambra critical clarification russ 09/26/07
#671 global_head.ftl cannot be overridden by virtual journal russ ambra medium enhancement jsuttor 09/28/07
#672 more issues with rss feeds in virtual context russ ambra medium defect jsuttor 09/28/07
#673 plostopaz02 shows clinical trials pages with plosone css and image files russ ambra critical clarification russ 09/28/07
#677 0.81: cannot look up user by id russ ambra low defect jsuttor 10/02/07
#681 virtual journal feeds share <id> value russ ambra medium clarification russ 10/03/07
#687 advice on tuning tomcat_opts on plosone, mulgara servers russ ambra high clarification ronald 10/10/07
#692 please ingest cover image article on snape so that sebastian can work on the toc page russ ambra critical task jsuttor 10/11/07
#696 recent articles tab on home page is empty russ ambra critical defect russ 10/15/07
#697 Need to create a @Blob annotation. amit topaz high enhancement pradeep 10/15/07
#705 /user/secure/assignAdminRole.action no longer works russ ambra medium defect jsuttor 11/02/07
#711 on publish, browse list gets innacurate russ ambra medium defect jsuttor 11/26/07
#717 add plos article type, related articles to feed, add group by article type sorting option russ ambra high enhancement russ 12/10/07
#725 configurable rating categories by article type rich ambra high enhancement jsuttor 12/17/07
#742 Rewrite the citation service in the PubApp to extract information from Mulgara rather then using XSL on the article. amit ambra medium task jsuttor 01/07/08
#764 Get rid of InitializeSessionOnLoginFilter pradeep ambra medium enhancement jsuttor 01/18/08
#766 recover gracefully on article delete if file cannot be moved from ingested to ingestion-queue russ ambra unassigned defect jsuttor 01/23/08
#768 ingest constructs illegal mulgara queries if empty elements exist russ ambra low defect ronald 01/24/08
#769 publish does not update date list on browse.action?field=date russ ambra medium defect jsuttor 01/24/08
#770 adding comments via startDiscussion.action is broken russ ambra critical defect jsuttor 01/25/08
#772 pub-app should respect config.pub.virtualJournals.journals list when pulling in config.freemarker properties russ ambra low enhancement jsuttor 01/28/08
#791 0.8.2.1 CJ Home Pages - menus display UNDER Flash ad in RHC stoomey ambra unassigned unassigned stoomey 02/21/08
#802 admin article delete function leaves articles in an inconsistent state on failure russ ambra high defect alex 02/27/08
#803 mulgara error "Found an empty Tuples with bound variables" - presumably pub-app is supplying bad data? russ ambra high defect jsuttor 02/27/08
#805 on certain ingests, browse cache entries are corrupted and article will not display russ ambra low unassigned jsuttor 02/28/08
#807 bring ehcache up on fedora russ ambra medium task jsuttor 02/29/08
#809 clicking on 'read more' link in formal correction doesn't scroll you down far enough in FF russ ambra low defect jkirton 02/29/08
#812 if pub-app thread has been waiting for a long time (>60s?) it should give up gracefully without opening a mulgara session russ ambra critical enhancement alex 02/29/08
#839 Can't generate null subscription mail in emailThisArticle-text.ftl rich ambra low defect jkirton 03/11/08
#843 stop storing keys for non-existant article in article-state russ ambra medium defect jsuttor 03/14/08
#844 test article ids for validity before attempting to look up article in mulgara russ ambra medium enhancement jsuttor 03/14/08
#850 Note/Comment: URL followed immediately by parentheses rich ambra medium defect jkirton 03/18/08
#861 it should not take ~100 mulgara queries to build an article russ ambra high clarification 03/21/08
#863 cache reply threads for annotations in listThread.action russ ambra medium enhancement jsuttor 03/21/08
#869 Browse by Date: use most recent pub date as the endDate for "past week", "past month", and "past 3 months" russ ambra high task 03/25/08
#888 Advanced Search not applying journal filter rich ambra critical defect 04/01/08
#902 Ingest tests ronald publishing-app-testing unassigned task 04/04/08
#909 change how advanced search page populates fields when user clicks "go to advanced search" russ ambra low defect jkirton 04/11/08
#926 global default journal - get rid of requirement to configure overlay journal russ ambra critical enhancement pradeep 05/01/08
#927 use overlay journal name as title of admin pages russ ambra unassigned task russ 05/01/08
#931 extend cascading file lookup filter to freemarker templates russ ambra high enhancement 05/06/08
#935 article_delete script fails if it can't find a .zip file to move from ingested to ingestion-queue russ ambra unassigned defect russ 05/08/08
#963 on ingest error, article still moved into ingested queue rich ambra unassigned unassigned rich 06/11/08
#982 Add HTTP exires header to served static resources jkirton ambra medium enhancement russ 07/09/08
#983 indexArticles.groovy script broken russ ambra unassigned defect rich 07/09/08
#986 Annotation display messed up ronald ambra unassigned defect jkirton 07/17/08
#988 Javascript security warning on annotation display ronald topaz unassigned defect jkirton 07/17/08
#1006 it's bad to have ambra.virtualJournals.JournalName.url defined in template russ ambra unassigned defect russ 08/01/08
#1011 feedback link generates an infinite loop of unique links, trapping spiders russ ambra unassigned defect rich 08/12/08
#1029 articles published since 0.9-final upgrade have bad links in search russ ambra critical defect rich 09/19/08
#1040 GraphConfig needs better javadoc and constructor for usability pag topaz medium defect pag 10/23/08
#1048 runitql swallows uri fragments pradeep topaz high defect ronald 10/28/08
#1094 mulgara doesn't start on boot russ topaz-mulgara unassigned defect rich 02/02/09
#1114 Upgrade Groovy to 1.5.8 (when available) rich topaz low defect pag 02/13/09
#1129 IE6 - Can't select subject categories in advanced search rich ambra low clarification rich 02/24/09
#1175 Adding a note to a hyperlink removes the hyperlink. rich ambra medium clarification josowski 03/17/09
#1308 Assigning admin privileges to user with DummuSSO breaks ambra security dragisak ambra unassigned defect dragisak 07/10/09
#1309 Search is slow when Lucene writes to disk ssterling topaz-mulgara high defect ronald 08/12/09

0.9.2 Release

Ticket Summary Reporter Component Priority Type Owner Created
#104 Handling different forms of copyright in NLM DTD 2.3 amit ambra high clarification rich 08/02/06
#787 retraction annotation rich ambra medium clarification rich 02/14/08
#875 RH nav bar too long for page if article contains many sections russ ambra medium clarification stoomey 03/25/08
#997 Update javascript [dojo] in the ambra/registration/webapp project jkirton ambra high clarification rich 07/23/08
#1010 add article type restriction to home page recent article block russ ambra unassigned task rich 08/12/08
#1031 Support for NLM DTD 2.3 in entity resolver cache rich ambra critical clarification rich 09/29/08
#1050 Garbage collection and other maintenance in Ambra's mulgara database after 0.9.1 deployment pradeep ambra critical defect russ 10/28/08
#1052 Custom configuration for recently published article block rich ambra medium clarification rich 11/08/08
#1062 Advanced Search page: error displaying previous query terms ssterling ambra medium clarification rich 12/05/08
#1076 Selection of recent articles for display on a journal front page ssterling ambra medium clarification rich 12/29/08
#1087 Update Dojo to latest point release (1.2.3) josowski ambra critical clarification rich 01/13/09
#1089 search migration results in many WARNs in mulgara log about insert failures russ ambra low clarification ronald 01/30/09
#1092 create admin user requires ambra restart to take effect russ ambra medium clarification npeterson 02/02/09
#1099 Search queries resulting in long processing before results returned rich topaz critical defect ronald 02/04/09
#1101 editAnnotationLoad.action is broken russ ambra medium clarification rich 02/05/09
#1109 Allow manual ordering of articles for browseIssue.action rich ambra critical clarification rich 02/11/09
#1110 Indicate formal correction or retraction annotation in browseIssue.action rich ambra low clarification rich 02/11/09
#1111 converted a note to a minor correction - note was deleted russ ambra low clarification rich 02/11/09
#1112 Advanced Search: improve client-side date validation ssterling ambra medium clarification rich 02/11/09
#1115 Article Page Redesign rich ambra critical clarification rich 02/13/09
#1118 Article sub pages need a standard link back to the article. rich ambra low clarification rich 02/13/09
#1119 Usability of slideshow - link back to article for search referers rich ambra low clarification rich 02/13/09
#1121 Article Type Blurbs rich ambra low clarification rich 02/13/09
#1124 Author order incorrect in search results rich ambra high defect ronald 02/20/09
#1125 create "issue" feed that follows issue ordering russ ambra medium enhancement russ 02/20/09
#1131 test performance during cache bootstrap russ ambra low clarification rich 02/26/09
#1133 Article page link to issue rich ambra medium clarification rich 02/26/09
#1136 Competing Interest Statement rich ambra high clarification rich 03/06/09
#1137 Retractions link is missing in the article comments tab rich ambra high clarification rich 03/09/09
#1138 Annotation with Competing Interest flagged as "correction" creates duplicate annotations rich ambra high clarification rich 03/09/09
#1139 Admin console exception - SAXParseException: Premature end of file rich ambra critical clarification rich 03/10/09
#1141 Invalid link sent to the secureRedirect.action from Related or Comments tab rich ambra high clarification rich 03/11/09
#1144 XML test failures on windows russ ambra low clarification russ 03/13/09
#1145 can't click into fields in ambra-registration register.action with IE6, lost left/right gutters in all pages in ambra-registration and cas webapps stoomey ambra high clarification rich 03/14/09
#1146 IE6 - tabs overlap title on article page stoomey ambra medium clarification rich 03/14/09
#1147 articleGrpListToCSV does not add comma between article types. wtoconnor ambra critical clarification rich 03/14/09
#1148 IE6, IE7 - general comment form display broken stoomey ambra high clarification rich 03/14/09
#1149 Cross Publishing after ingest allows cross publishing of articles that are part of the journal wtoconnor ambra critical clarification rich 03/14/09
#1150 Add type Issue to article feed for eToc scripts wtoconnor ambra high enhancement wtoconnor 03/14/09
#1151 IE6, IE7, FF2 - notation and ratings forms, right column of forms is aligned top stoomey ambra low clarification rich 03/14/09
#1152 Issue add article broken wtoconnor ambra medium defect wtoconnor 03/14/09
#1153 IE6, IE7, FF2 - error block on notation and rating form has no bottom margin stoomey ambra low clarification rich 03/14/09
#1154 Error block on notation and rating form remains visible if posting is canceled. stoomey ambra medium clarification rich 03/14/09
#1155 Safari 3, Windows - annotations, corrections, retractions not displayed on article page stoomey ambra low clarification rich 03/14/09
#1156 Browse by Subject - number of articles in category missing on PLoS ONE stoomey ambra high defect russ 03/14/09
#1157 PLoS ONE - simple search sometimes results in site error stoomey ambra high defect rich 03/14/09
#1159 IE6, IE7 - advanced search subject categories radio buttons broken stoomey ambra high clarification rich 03/14/09
#1160 Related content block on article page RHC should only display subject categories for ONE articles. stoomey ambra high clarification rich 03/16/09
#1161 Included in collections block in article rhc related content block is using wrong style stoomey ambra medium clarification rich 03/16/09
#1162 Rating links change to javascript:void(0); when logged in rich ambra high clarification rich 03/16/09
#1164 Competing interest statement display in annotations rich ambra high clarification rich 03/17/09
#1165 ONE template is displaying all the hidden elements. rich ambra high clarification rich 03/17/09
#1166 browseIssue.action bugs - spacing and "0" after author anmes rich ambra high clarification rich 03/17/09
#1167 Link to 'Competing Interest page' incorrect rich ambra high clarification rich 03/17/09
#1168 Duplicated acknowledgments on the article pages rich ambra high clarification rich 03/17/09
#1169 Text for notes dialog on areas that can't be annotated rich ambra high clarification rich 03/17/09
#1170 Note dialog containing guidelines needs a close button rich ambra critical clarification rich 03/17/09
#1171 Should not be able to add a note annotation to Abstract text rich ambra medium clarification rich 03/17/09
#1172 for automatically ordered issue, issue feed ordering is different from browseIssue ordering russ ambra low clarification rich 03/17/09
#1173 can't figure out how to edit/order issue russ ambra high defect rich 03/17/09
#1174 Update to content in related tab rich ambra high clarification rich 03/17/09
#1176 Advanced Search - creator AND results incorrect rich ambra unassigned defect ronald 03/17/09
#1177 Allow feed of type=Issue to default to current Issue if issueURI is not specified. wtoconnor ambra unassigned defect russ 03/17/09
#1179 "PLoS" should not be italicized in Related Content box rich ambra high clarification rich 03/17/09
#1180 Article titles not correctly italicized on article pages rich ambra high clarification rich 03/17/09
#1181 Digg not accepting article bookmarks rich ambra low defect rich 03/17/09
#1182 Setter and Getters not conforming to Java Bean Spec wtoconnor ambra high defect wtoconnor 03/18/09
#1183 Jump to Menu UI issue josowski ambra low clarification rich 03/18/09
#1185 Force Ingest of articles does not work wtoconnor ambra critical clarification rich 03/18/09
#1186 CIS bolded lead-in stoomey ambra low clarification rich 03/18/09
#1187 Article blurb icon only shows in Related/Comments tab rich ambra high clarification rich 03/18/09
#1188 Cross published articles need "Published in <journal>" text/link rich ambra high clarification rich 03/18/09
#1189 list of cross published articles need to be links npeterson ambra high clarification rich 03/18/09
#1190 Browse by Pub Date slowness after cross publishing npeterson ambra critical clarification rich 03/18/09
#1191 Can add articles directly to Article URI list npeterson ambra critical clarification rich 03/18/09
#1192 article URI needs to be linked npeterson ambra high clarification rich 03/18/09
#1193 delete articles from issue using article URI field npeterson ambra critical clarification rich 03/18/09
#1194 delete article failing npeterson ambra critical defect rich 03/18/09
#1195 error on ordering issues in a volume npeterson ambra critical defect wtoconnor 03/18/09
#1196 manage virtual journals set current issue npeterson ambra high clarification rich 03/18/09
#1198 delete article needs to return package to the ingestion-queue npeterson ambra critical clarification rich 03/18/09
#1199 creating issue fails npeterson ambra critical defect dragisak 03/18/09
#1201 Re-order Issue removes all articles from that issue rich ambra critical clarification rich 03/19/09
#1202 Clearing Image URI in ISsue Management Fails wtoconnor ambra high clarification rich 03/19/09
#1204 Related articles missing <italic> rich ambra high clarification rich 03/19/09
#1205 Update to 'Published In' block rich ambra high clarification rich 03/20/09
#1206 Update link in Rating instruction text rich ambra medium clarification rich 03/20/09
#1207 Can only post one Note and GSOD rich ambra critical clarification rich 03/20/09
#1208 Competing interests text automatically placed on old comments rich ambra critical clarification rich 03/20/09
#1209 Advanced search "AND" operator is broken stoomey ambra high defect rich 03/20/09
#1210 Change Pubmed to PubMed on Related tab for an article npeterson ambra medium defect rich 03/20/09
#1211 Admin Panel - Unable to Manually Order Articles npeterson ambra critical clarification rich 03/20/09
#1212 Medicine - email article form: background color is wrong stoomey ambra low clarification rich 03/20/09
#1214 eLetters to Annotations migration HTML rendering of hyperlink npeterson ambra high defect russ 03/20/09
#1217 simpleSearch.action results display XML markup rich ambra medium clarification rich 03/22/09
#1218 Manage Issues - Can't reorder more than 12 issues rich ambra medium clarification rich 03/23/09
#1219 Long URLS are not line breaking rich ambra low clarification rich 03/23/09
#1220 Medicine displays wrong tagline in window title. stoomey ambra medium defect rich 03/23/09
#1223 Comment out all article type blurb icons rich ambra high clarification rich 03/24/09
#1224 Change "Related" tab text to "Related Content" rich ambra high clarification rich 03/24/09
#1225 Remove date range from advanced search rich ambra critical clarification stoomey 03/24/09
#1228 Adding a new Issue to an existing Volume removes all Articles for all Issues in the existing Volume until ObjectCache and BrowseCache are cleared npeterson ambra critical clarification rich 03/24/09
#1229 Formal Correction link stubbed out npeterson ambra critical clarification rich 03/25/09
#1231 Typo in the annotation pop-up npeterson ambra high clarification rich 03/25/09
#1232 Article URL encoding changing when returning from General Comment form. stoomey ambra medium clarification rich 03/25/09
#1233 Adding notes to equation numbers renders the note unreadable npeterson ambra low clarification rich 03/25/09
#1234 Jump to Menu display issue stoomey ambra medium clarification rich 03/25/09
#1235 No competing interest statement statement wrong on ratings stoomey ambra high defect josowski 03/25/09
#1236 Article titles incorrectly italicized npeterson ambra critical clarification rich 03/25/09
#1237 Rollover text - Related Content vs. Related Information npeterson ambra medium clarification rich 03/25/09
#1240 404 for dijit_rtl.css on article/comment/related pages russ ambra unassigned clarification rich 03/25/09
#1244 Comments ending in URLs are cut off rich ambra low defect josowski 03/30/09
#1246 Freemarker error with divide by zero rich ambra medium clarification rich 03/30/09
#1247 Disproportionately large Digg logo on CompBiol articles rich ambra medium defect rich 03/30/09
#1248 textSearchAtLeastOne is undefined in journals/plosone/search/searchStart.ftl rich ambra medium clarification rich 03/30/09
#1250 Trackbacks not showing up on articles rich ambra high clarification rich 03/30/09
#1254 Remove ability to Advanced Search by date from Ambra npeterson ambra critical clarification rich 04/01/09
#1255 FF2: Info icon displays with the text "Info" overlayed on top. stoomey ambra medium defect rich 04/02/09

0.9.3_rc1 Release

Ticket Summary Reporter Component Priority Type Owner Created
#814 Article Annotation Notification Feed (aka feeds are slow) russ ambra high clarification ssterling 03/03/08
#1046 Remove obsolete migration dragisak ambra high clarification rich 10/23/08
#1122 don't cache non-existant files russ ambra high clarification rich 02/17/09
#1126 add plos article type to extended feed russ ambra medium enhancement wtoconnor 02/20/09
#1130 site freezes up during ingest and publish actions russ ambra high clarification rich 02/26/09
#1134 ambra hangs under load russ ambra low clarification rich 03/02/09
#1163 Expression thisPage is undefined on first view of article rich ambra medium clarification rich 03/17/09
#1178 simpleSearch.action search results include incorrect HTML rich ambra low clarification rich 03/17/09
#1215 Move addArticle and removeArticle methods into a service class npeterson ambra medium clarification rich 03/20/09
#1245 Error parsing query rich ambra high clarification rich 03/30/09
#1251 caches not invalidated correctly on article delete npeterson ambra high clarification rich 03/30/09
#1256 Ambra slows down when a peer starts rich ambra high clarification rich 04/03/09
#1257 UI Messaging when no Blog entries are found in ALM npeterson ambra unassigned clarification rich 04/06/09
#1258 UI Nav Bar reduce list length npeterson ambra unassigned clarification rich 04/06/09
#1261 Standardized Performance Testing npeterson ambra high enhancement ssterling 04/06/09
#1262 Article Annotation Notification Feed npeterson ambra unassigned enhancement dragisak 04/06/09
#1263 UI Implementation for Biology Launch npeterson ambra unassigned enhancement stoomey 04/06/09
#1264 ArticleAnnotationCache does not respect TTL russ ambra high clarification russ 04/17/09
#1265 Admin Panel Site Error when creating Biology Issues npeterson ambra high clarification rich 04/17/09
#1266 Broken template display for invalid static pages instead of 404 npeterson ambra high clarification rich 04/17/09
#1267 CODE_ARTICLE_TITLE: pmed.1000053, pmed.1000055 npeterson ambra medium clarification rich 04/17/09
#1268 Can't page through search results - key not Serializable rich ambra high defect wtoconnor 04/20/09
#1270 freemarker.cache using incorrect directory rich ambra high clarification russ 04/27/09
#1271 Expression field is undefined in plosone global_head.ftl rich ambra critical clarification rich 04/27/09
#1273 Serialization error on Results class during a search ssterling ambra unassigned clarification rich 04/27/09
#1275 Trap currentIssue in browseVolume.ftl rich ambra medium clarification rich 04/28/09
#1276 Double Annotation Bug josowski ambra medium clarification rich 04/28/09
#1277 Report a Concern / Respond to this Posting Bug josowski ambra medium clarification rich 04/28/09
#1279 Create Annotation Body Validation Fails npeterson ambra medium clarification rich 04/29/09
#1280 Report a Concern on a Comment Input Validation Fails npeterson ambra medium clarification rich 04/29/09
#1281 Competing Interests Sequence Error npeterson ambra high clarification rich 04/29/09
#1282 Pop-ups showing in right hand column npeterson ambra medium clarification rich 04/29/09
#1283 Simple Search colon character causes Site Error npeterson ambra low clarification npeterson 04/29/09
#1284 Ratings not showing in Annotation Feed npeterson ambra medium clarification npeterson 04/29/09
#1285 Note Across the DOI at the Bottom of Figure and Text Below Figure Cause the Figure to Disappear npeterson ambra high clarification rich 04/29/09
#1287 User First and Last Name do not show in the feed. npeterson ambra medium clarification npeterson 04/29/09
#1288 Trackbacks not showing in the feed npeterson ambra medium clarification npeterson 04/29/09
#1289 Formal Corrections and Minor Corrections not appearing in Annotation Feed. npeterson ambra medium defect dragisak 04/29/09
#1290 Typo on Advanced Search page npeterson ambra medium clarification rich 04/29/09
#1292 Input Size message and incorrect Competing Interests message npeterson ambra medium clarification rich 04/29/09
#1293 Right Nav Bar Breaking on Second Line npeterson ambra low clarification rich 04/29/09
#1294 Error in Genetics Template for Simple Search npeterson ambra medium clarification rich 04/29/09
#1295 Note Disappearing when selection starts at the end of the Figure Text (usually includes the DOI) npeterson ambra medium defect josowski 04/29/09
#1296 Author Contributions not appearing in article 'jump to' list npeterson ambra high clarification rich 04/29/09
#1297 Author Contributions section not appearing in article 'jump to' list rich ambra medium clarification rich 04/30/09
#1299 Annotation Feed - Null Pointer Exception npeterson ambra high clarification npeterson 05/05/09
#1300 Add INFO logging for remote procedure call to CrossRef in Publish transaction npeterson ambra high clarification rich 05/05/09

0.9.3_rc2 Release

Ticket Summary Reporter Component Priority Type Owner Created
#1117 Maven build separation of Ambra and Topaz rich topaz-fedora high task pag 02/13/09

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Ticket Summary Reporter Component Priority Type Owner Created
#1 Straw man for Topaz amit infrastructure critical task ronald, amit, pradeep 03/27/06
#2 Get both servers (Development and Application) up amit infrastructure high task ronald 03/27/06
#3 Cocoon on top of Fedora/Kowari for strawman amit infrastructure critical task pradeep 03/27/06
#4 Resolver interface to make Kowari talk to Fedora amit topaz-mulgara high task ronald 03/27/06
#5 Check for enhancement for the Resource Index generator in Kowari amit fedora-object high task pradeep 03/27/06
#6 automatic backups amit infrastructure high task ronald 03/28/06
#7 First cut of the information model amit information-model high task amit 03/28/06
#8 feedback link on every page ronald user-interface critical enhancement stevec 03/31/06
#9 Features for DoDo release amit user-interface critical task all 04/04/06
#10 Race-condition in filter-resolver/resource-index-module ronald topaz-mulgara critical defect ronald 04/20/06
#11 Naming of maven packages ronald build-system medium defect pradeep 04/20/06
#12 Documentation for Topaz security model/architecture amit documentation high task pradeep 04/24/06
#13 Need to determine the precise legal/copyright statements to be added to Topaz source amit legal high task edyoon 04/24/06
#14 Need to determine what dbs/directory to use for user name & password for Topaz amit security high task amit 04/24/06
#15 System for password recovery. amit security high enhancement amit 04/24/06
#16 Need to determine what format to use for SIP/AIP/DIP (Open access reference model) amit ingest critical task ronald 04/24/06
#17 Need to fix the domain name for Topaz amit infrastructure high task amit 04/24/06
#18 Will PLoS One or subsequent applications require to delete repository objects? amit feature-clarification medium task edyoon 04/24/06
#19 Are multiple discussion threads needed? amit feature-clarification high task edyoon 04/24/06
#20 Need to nail down the precise semantics and nature of communities (private, public, group, etc.) amit feature-clarification high task edyoon 04/24/06
#21 Need to select Framework for building the applications, starting with PLoS One. amit user-interface critical task stevec 04/24/06
#22 System design/architecture document amit documentation high task amit 04/25/06
#23 User interface for the CAS server should correspond to the UI for PLoS One? amit user-interface medium enhancement stevec 04/25/06
#24 Migrate servers to new domain name. amit infrastructure high task amit 04/26/06
#25 Article management Topaz API amit topaz high task ronald 04/26/06
#26 Kowari Legal Status amit legal high clarification amit 04/26/06
#27 User login through CAS amit topaz critical task pradeep 04/26/06
#28 Registration of new users for PLoS One. amit topaz high task stevec 04/26/06
#29 Need to resolve Handles management amit topaz high task edyoon 04/27/06
#30 Clarification on assumption of bandwidth between PLoS One server and browser amit feature-clarification high clarification rich 04/30/06
#31 Password recovery mechanism needs to be defined. amit feature-clarification high clarification rich 04/30/06
#32 What meta-data would the OAI PMH harverst for October release? amit feature-clarification high clarification rich 04/30/06
#33 Do we support Atom query for October release amit feature-clarification high clarification rich 04/30/06
#34 Format for paper abstract in triples/pseudo triples amit information-model high task amit 04/30/06
#35 Review process changes to allow author to specify the abstract of the article in triples/pseudo triples format amit review-process high task chris 04/30/06
#36 GUI Interface for comments/discussions (e.g. Kupu) amit user-interface high clarification rich 04/30/06
#37 User ratings amit feature-clarification high clarification rich 04/30/06
#38 Author Functionality amit feature-clarification high clarification chris 04/30/06
#39 Can admin edit annotations? amit feature-clarification high clarification chris 04/30/06
#40 Responsibility for depositing article information in the PubMed Central for archiving. amit feature-clarification high clarification rich 04/30/06
#41 Responsibility for depositing article information with PubMed for indexing amit feature-clarification high clarification rich 04/30/06
#42 Banner Ad Management for PLoS One. amit feature-clarification critical task amit 05/03/06
#43 Testing framework for PLoS One amit publishing-app-testing high task ebrown 05/03/06
#44 Clarification needed on email alerts amit feature-clarification high clarification rich 05/03/06
#45 User and article statistics to be designed and documented amit feature-clarification critical task amit 05/03/06
#46 Data quality for testing. amit topaz-testing high task amit 05/03/06
#47 Continuum integration with Trac amit infrastructure medium task amit 05/04/06
#48 Annotations services and API amit topaz critical enhancement pradeep 05/10/06
#49 Modify poms for web-apps to ensure log4j jar file is not included in WEB-INF/lib pradeep build-system high task ebrown 06/01/06
#50 Create a jdk logger to write to log4j pradeep infrastructure high task ebrown 06/01/06
#51 Modify all poms to ensure javac source=1.4 and target=1.4 pradeep build-system high defect ebrown 06/01/06
#52 Re-org axis poms to have core classes seperated out. (is that into topazproject/libs?) pradeep build-system high defect somebody 06/01/06
#54 Create a topaz jar with flexible user credential mechanisms (support CAS, BASIC etc.) pradeep topaz high task pradeep 06/01/06
#56 Create a user profile service. set/get/list profile info for a user pradeep topaz high task ronald 06/01/06
#57 Create a group profile service. get/set/list profile info for user groups. pradeep topaz high task pradeep 06/01/06
#58 User management service. CRUD for users and groups. pradeep topaz high task somebody 06/01/06
#59 ACL service. chmod, chown, chgrp and corresponding gets for resource URIs. pradeep topaz high task pradeep 06/01/06
#61 Article ratings algorithm rich feature-clarification high task chris 06/08/06
#62 Registration field requirements rich feature-clarification high clarification rich 06/08/06
#63 Test framework for Topaz ronald topaz-testing high task ebrown 06/11/06
#64 Topaz performance optimization ronald topaz high defect ebrown 06/11/06
#65 Need information on email alerts amit feature-clarification high clarification ebrown 06/14/06
#67 Article ratings metric amit feature-clarification high clarification chris 06/14/06
#68 Wrong datatypes in wsdl generated by java2wsdl tool for String and URI. pradeep topaz high defect somebody 06/15/06
#69 Provide more info to policy in article access-control ronald security low enhancement pag 06/18/06
#70 Script to extract more data out of existing ingested articles. ronald topaz critical enhancement ebrown 06/18/06
#71 Replace fedora-client with OhioLINK's client ronald topaz medium enhancement somebody 06/18/06
#72 Article ingest should insert RDF into kowari/mulgara instead of creating DC/RELS-EXT datastreams ronald topaz critical defect ronald 06/23/06
#73 API to query for and list articles ronald topaz high enhancement ronald 06/23/06
#74 Trackback link for articles amit ambra high enhancement stevec 06/27/06
#75 Problem downloading things from repositories ebrown build-system medium defect ebrown 06/29/06
#77 Support for public user profiles stevec topaz high enhancement stevec 07/03/06
#78 handling post launch feedback stevec feature-clarification high task amit 07/03/06
#79 mobile browser support stevec user-interface medium enhancement stevec 07/03/06
#80 Ability to filter results on the server based on some criteria from client stevec topaz high enhancement amit 07/05/06
#82 What would the DOI resolver return? amit topaz high clarification amit 07/13/06
#83 Fix fedora uploader and enable proper security on all webservices ronald topaz unassigned defect somebody 07/18/06
#84 Create couple of power point slides for John Wilbanks with respect to Topaz Architecture amit topaz high task amit 07/18/06
#85 Annotation service is sending the same CAS ticket twice stevec topaz medium defect pradeep 07/18/06
#86 need to come up with user testing scenarios stevec publishing-app-testing medium task pradeep 07/18/06
#87 Alerts may need to support app IDs stevec topaz unassigned enhancement somebody 07/20/06
#88 Write xacml policy to honor profile visibility preferences ronald topaz unassigned defect ronald 07/23/06
#90 Transfer existing registered PLoS user database to Topaz/PLoS ONE amit topaz unassigned task somebody 07/25/06
#91 Get javadocs to generate from head/pom.xml ebrown build-system unassigned task ronald 07/28/06
#92 Pickup Ronald's cargo patch so integration tests can shutdown jetty properly ebrown topaz-testing medium task pradeep 07/28/06
#93 Integrate javadocs and continuum into trac ebrown build-system unassigned task amit 07/28/06
#94 Fedora/Kowari db helper classes to purge db ebrown topaz-testing unassigned task pradeep 07/28/06
#95 Patch maven for plugin ordering ebrown infrastructure unassigned defect ebrown 07/28/06
#96 Users should be able to create annotations with "anonymouse coward" amit topaz unassigned task pradeep 07/28/06
#97 Uniformly set sub-modules to 0.5-SNAPSHOT ebrown build-system unassigned defect ebrown 07/28/06
#98 implement journal admin ronald topaz critical defect pradeep 07/31/06
#99 Improve meta-data extraction during ingest ronald ambra critical enhancement ronald 07/31/06
#100 DPuBS Source rich review-process low task amit 08/01/06
#101 implement ratings service ronald topaz high defect ronald 08/01/06
#102 Fedora Access Control pradeep topaz high defect pradeep 08/01/06
#103 Re-authenticate with CAS on session time out pradeep topaz unassigned defect somebody 08/01/06
#105 split ws.core to ws.api and ws.impl pradeep topaz unassigned defect pradeep 08/04/06
#106 User address field in profile amit topaz unassigned defect somebody 08/04/06
#107 investigate interoperability/portability of our API's/wsdl's ronald topaz unassigned task somebody 08/05/06
#108 Alerts service to generate XML for use to generate RSS feeds ebrown topaz unassigned enhancement ebrown 08/07/06
#109 cache PMC DTD's to avoid delay during ingest ronald topaz critical enhancement ronald 08/08/06
#110 How do we utilise the semantic technology integration in terms of tagging? amit topaz critical enhancement amit 08/09/06
#111 Define user roles to simplify access control management pradeep topaz unassigned enhancement 08/10/06
#112 ItqlInterpreter session lock-up pradeep topaz high defect ronald 08/10/06
#113 Pre-create kowari models (users, grants, revokes, etc.) pradeep topaz unassigned defect pradeep 08/10/06
#114 Proper URIs (preferably URLs that will explain) for all permissions used pradeep topaz unassigned defect ebrown 08/10/06
#115 Remove unused policy files from ws-webapps now that [427] provides them from base-ws-webapp. pradeep topaz critical defect ebrown 08/11/06
#116 Update alerts to use proper article date field with Kowari <xsd:date> type ebrown topaz critical defect ebrown 08/11/06
#117 Add email generation to alerts-service ebrown topaz high defect ebrown 08/11/06
#118 Alert service should send out alerts on a configurable schedule ebrown topaz medium enhancement ebrown 08/11/06
#119 Fix continuum to clean up after itself and create docs ebrown build-system high defect ebrown 08/11/06
#120 Get email address and user-name from profile ebrown topaz unassigned defect ebrown 08/11/06
#121 Garbage collect deleted users ebrown topaz medium defect ebrown 08/11/06
#122 Create test environment that includes log4j and associated configuration ebrown topaz medium defect ebrown 08/11/06
#123 Configuration fixes/changes ronald topaz unassigned enhancement ebrown 08/11/06
#125 Escape user data in iTQL queries (security issue) ronald topaz high defect ronald 08/14/06
#126 Improve alerts email.xsl stylesheet ebrown ambra low defect jsuttor 08/14/06
#127 Clean up alerts service ebrown topaz unassigned defect ebrown 08/14/06
#128 xpointer library licensing stevec topaz unassigned task amit 08/15/06
#129 xpointer library modifcations stevec topaz critical task pradeep 08/15/06
#130 Packaging for Topaz amit topaz high task amit 08/16/06
#131 Make RDF schema and URL's/URI's consistent ronald topaz high task ebrown 08/21/06
#132 Add a user state flag ronald topaz high enhancement ronald 08/21/06
#133 Create a list of beta testers amit topaz unassigned task somebody 08/22/06
#134 Extract alert user-data from plos and import it into plosone preferences ebrown topaz critical enhancement somebody 08/22/06
#135 Utility to extract new list of email addresses for various plos alerts ebrown topaz critical enhancement ebrown 08/22/06
#136 Google search interface amit topaz high enhancement ebrown 08/22/06
#137 Enhance user profile ronald topaz critical enhancement ronald 08/22/06
#138 Integration test log4j default config and minor cleanup ebrown topaz-testing medium defect ebrown 08/25/06
#139 If JAVA_HOME is not set, re-package/fedora build should fail ebrown topaz high defect ebrown 08/25/06
#140 generic "plos journals" template for login/profile pages russ user-interface medium task russ 08/25/06
#141 one click create new (unconfirmed) user russ topaz unassigned task somebody 08/25/06
#142 unsubscribe from email alerts without login russ topaz unassigned task somebody 08/25/06
#143 Process for patching maven libraries and plugins ebrown build-system unassigned task amit 08/25/06
#144 Helpers/framework for logging in and run-as-user in tests ronald topaz-testing critical enhancement pradeep 08/26/06
#146 Integrate and test the Fedora search service amit topaz critical task ebrown 08/26/06
#147 Integrate and test PostgresSQL with Fedora amit topaz high task somebody 08/28/06
#148 for annotation/replies body, linkify url stevec user-interface medium defect viru 08/28/06
#149 Abstract iTQL query strings from code ebrown topaz critical task somebody 08/29/06
#150 Need to track licenses. amit build-system medium task 08/29/06
#151 Rename NoSuchIdExceptions & DuplicateIdExceptions to unique names ebrown topaz medium task ebrown 08/29/06
#152 Make the unibo xpointer library maven buildable and up to date with new libraries. pradeep topaz unassigned task pradeep 09/01/06
#153 Empty argument "" in string-range() xpointer function does not work pradeep topaz unassigned defect pradeep 09/01/06
#154 Flatten exceptions returned through axis server ronald topaz critical defect ronald 09/04/06
#155 Share test data ebrown topaz medium task ebrown 09/07/06
#156 Figure out how to index article XML in fedoragsearch ebrown topaz high task ebrown 09/07/06
#157 Add xacml policies for actions that are always permitted. pradeep topaz high task pradeep 09/07/06
#158 evaluate how best to handle the embedded xalan in xpointer pradeep topaz critical defect pradeep 09/08/06
#160 CrossRef Services rich ingest high task edyoon 09/11/06
#161 Article Content Design stevec user-interface high task mshear 09/11/06
#162 Overall structural markup of site level content stevec user-interface high task mshear 09/11/06
#163 Article Image handling design stevec user-interface medium task stevec 09/11/06
#164 Print stylesheet stevec user-interface medium task mshear 09/11/06
#165 Apply xpointer annotations to articles and return intermediate XML amit topaz critical enhancement pradeep 09/11/06
#166 Support testng in unit and integration tests ebrown topaz unassigned enhancement ebrown 09/15/06
#167 Fix makearticle.py to munge data better for ingest ebrown topaz unassigned defect ebrown 09/15/06
#168 Clean up email alert text content ebrown topaz medium defect ebrown 09/15/06
#1