{6} All Tickets By Milestone (Including closed) (1312 matches)

A more complex example to show how to make advanced reports.

0.9.3_rc2

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#919 support external template sets ambra new None 0.9-SNAPSHOT enhancement critical dragisak 04/06/09
#1108 promoted a note to a formal correction and the body was eaten ambra new None 0.9.1_rc1 clarification critical russ 04/15/09
#1269 publishing articles is slow ambra new None 0.9.2 defect critical wtoconnor 05/07/09
#870 annotation in numbered list messes up formatting ambra new None 0.8.2.1 defect high josowski 04/06/09
#996 disallow text selection based article annotations for text adjacent to figures and tables ambra new None clarification high rich 04/29/09
#1274 serialization errors in 0.9.3 ambra assigned None 0.9.3 defect high wtoconnor 05/07/09
#1286 Notes Across Different Sections of Text Should Not Be Allowed ambra new None 0.9.3 defect high josowski 04/30/09
#1304 UnhandledException(PLoSMedicine)> max(1, startPage - 9) is undefined ambra new None 0.9.3 defect high josowski 05/11/09
#1305 Blog links missing ambra new None 0.9.3 clarification high rich 05/12/09
#930 handle site-wide overrides for css, javascript, and image files ambra new None 0.9-SNAPSHOT enhancement medium 04/06/09
#940 Verify that ambra-theme is up to date and also only maintain copies of what we changed, ambra new None 0.9-SNAPSHOT task medium dragisak 04/06/09
#1088 get rid of PLoSJournals override directory, use default journal instead ambra new None 0.9.1-SNAPSHOT enhancement medium dragisak 04/06/09
#1230 Adding note to URI in figure legend causes incorrect placement ambra new None 0.9.1_rc1 clarification medium josowski 04/06/09
#785 Migrate Formal Correction Header HTML markup assembly from javascript to viewnlm-v2.xsl ambra new None 0.8.2.1-SNAPSHOT task low josowski 04/06/09
#1127 freemarker.journal.page.title configuration does not propagate from default journal to other journals ambra new None 0.9.1_rc2-SNAPSHOT defect low rich 04/06/09
#1132 add ttl and set eternal false for some caches ambra new None 0.9.1_rc1 clarification low russ 05/06/09
#1135 ambra hangs when multiple ambras are in use on the same stack ambra new 0.9.1_rc1 clarification low npeterson 05/13/09
#1200 article display messed up in topazproject plos templates ambra new None 0.9.1_rc1 clarification low dragisak 04/06/09
#1291 Wrong selection error in Authors list and References list ambra new None 0.9.3 defect low josowski 04/30/09
#889 allow admin to set volume and issue of formal correction note ambra new None 0.8.2.1 enhancement unassigned dragisak 04/06/09
#987 Annotation display messed up ambra new None 0.9-rc1 defect unassigned josowski 04/06/09
#1025 remove need for freemarker config in defaults.xml ambra new None task unassigned dragisak 04/06/09
#1259 Google Scholar link returning incorrect result set ambra new None 0.9.3 defect unassigned josowski 05/06/09
#1260 Multiple Scopus Citations in Cited By Links ambra assigned None 0.9.3 defect unassigned josowski 05/06/09
#1278 change author list format in extended feed ambra new None 0.9.2 task unassigned npeterson 05/13/09
#1298 Cannot access install scripts for ambra ambra new None 0.9.2 defect unassigned npeterson 05/13/09
#1302 Filter has not been registered with the session-factory ambra new None 0.9.2 defect unassigned dragisak 05/07/09
#1117 Maven build separation of Ambra and Topaz topaz-fedora closed fixed 0.9.1_rc1 task high pag 08/13/09

0.9.3_rc1

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#1300 Add INFO logging for remote procedure call to CrossRef in Publish transaction ambra closed fixed 0.9.2 clarification high rich 05/13/09
#1122 don't cache non-existant files ambra closed worksforme 0.9.1_rc1 clarification high rich 05/13/09
#1130 site freezes up during ingest and publish actions ambra closed duplicate clarification high rich 05/13/09
#1256 Ambra slows down when a peer starts ambra closed worksforme 0.9.1_rc1 clarification high rich 05/13/09
#1134 ambra hangs under load ambra closed worksforme 0.9.1_rc1 clarification low rich 05/13/09
#814 Article Annotation Notification Feed (aka feeds are slow) ambra closed fixed 0.8.2.1 clarification high ssterling 05/07/09
#1261 Standardized Performance Testing ambra closed fixed 0.9.2 enhancement high ssterling 05/07/09
#1267 CODE_ARTICLE_TITLE: pmed.1000053, pmed.1000055 ambra closed fixed 0.9.2 clarification medium rich 05/07/09
#1251 caches not invalidated correctly on article delete ambra closed fixed 0.9.1_rc1 clarification high rich 05/07/09
#1263 UI Implementation for Biology Launch ambra closed fixed 0.9.2 enhancement unassigned stoomey 05/07/09
#1296 Author Contributions not appearing in article 'jump to' list ambra closed wontfix 0.9.3 clarification high rich 05/07/09
#1281 Competing Interests Sequence Error ambra closed fixed 0.9.3 clarification high rich 05/07/09
#1283 Simple Search colon character causes Site Error ambra closed fixed 0.9.3 clarification low npeterson 05/07/09
#1299 Annotation Feed - Null Pointer Exception ambra closed fixed 0.9.3 clarification high npeterson 05/06/09
#1284 Ratings not showing in Annotation Feed ambra closed fixed 0.9.3 clarification medium npeterson 05/06/09
#1288 Trackbacks not showing in the feed ambra closed fixed 0.9.3 clarification medium npeterson 05/06/09
#1294 Error in Genetics Template for Simple Search ambra closed fixed 0.9.3 clarification medium rich 05/04/09
#1277 Report a Concern / Respond to this Posting Bug ambra closed fixed 0.9.2 clarification medium rich 05/04/09
#1290 Typo on Advanced Search page ambra closed fixed 0.9.2 clarification medium rich 05/04/09
#1264 ArticleAnnotationCache does not respect TTL ambra closed fixed 0.9.3 clarification high russ 05/01/09
#1293 Right Nav Bar Breaking on Second Line ambra closed fixed 0.9.3 clarification low rich 05/01/09
#1297 Author Contributions section not appearing in article 'jump to' list ambra closed fixed 0.9.2 clarification medium rich 05/01/09
#1287 User First and Last Name do not show in the feed. ambra closed invalid 0.9.3 clarification medium npeterson 04/30/09
#1289 Formal Corrections and Minor Corrections not appearing in Annotation Feed. ambra closed worksforme 0.9.3 defect medium dragisak 04/30/09
#1285 Note Across the DOI at the Bottom of Figure and Text Below Figure Cause the Figure to Disappear ambra closed fixed 0.9.3 clarification high rich 04/30/09
#1295 Note Disappearing when selection starts at the end of the Figure Text (usually includes the DOI) ambra closed fixed 0.9.2 defect medium josowski 04/30/09
#1280 Report a Concern on a Comment Input Validation Fails ambra closed fixed 0.9.3 clarification medium rich 04/30/09
#1292 Input Size message and incorrect Competing Interests message ambra closed fixed 0.9.3 clarification medium rich 04/30/09
#1279 Create Annotation Body Validation Fails ambra closed fixed 0.9.3 clarification medium rich 04/30/09
#1282 Pop-ups showing in right hand column ambra closed fixed 0.9.3 clarification medium rich 04/30/09
#1276 Double Annotation Bug ambra closed fixed 0.9.2 clarification medium rich 04/30/09
#1275 Trap currentIssue in browseVolume.ftl ambra closed fixed 0.9.2 clarification medium rich 04/30/09
#1215 Move addArticle and removeArticle methods into a service class ambra closed fixed 0.9.1_rc1 clarification medium rich 04/29/09
#1265 Admin Panel Site Error when creating Biology Issues ambra closed fixed 0.9.2 clarification high rich 04/29/09
#1178 simpleSearch.action search results include incorrect HTML ambra closed fixed 0.9.1_rc1 clarification low rich 04/29/09
#1046 Remove obsolete migration ambra closed fixed 0.9.1-SNAPSHOT clarification high rich 04/28/09
#1270 freemarker.cache using incorrect directory ambra closed wontfix 0.9.3 clarification high russ 04/28/09
#1273 Serialization error on Results class during a search ambra closed fixed 0.9.2 clarification unassigned rich 04/28/09
#1245 Error parsing query ambra closed fixed 0.9.1_rc1 clarification high rich 04/28/09
#1271 Expression field is undefined in plosone global_head.ftl ambra closed wontfix 0.9.2 clarification critical rich 04/28/09
#1268 Can't page through search results - key not Serializable ambra closed duplicate 0.9.2 defect high wtoconnor 04/28/09
#1163 Expression thisPage is undefined on first view of article ambra closed fixed 0.9.1_rc1 clarification medium rich 04/27/09
#1266 Broken template display for invalid static pages instead of 404 ambra closed fixed 0.9.2 clarification high rich 04/27/09
#1258 UI Nav Bar reduce list length ambra closed fixed 0.9.2 clarification unassigned rich 04/20/09
#1257 UI Messaging when no Blog entries are found in ALM ambra closed fixed 0.9.2 clarification unassigned rich 04/20/09
#1126 add plos article type to extended feed ambra closed fixed 0.9.1_rc2-SNAPSHOT enhancement medium wtoconnor 04/17/09
#1262 Article Annotation Notification Feed ambra closed duplicate 0.9.2 enhancement unassigned dragisak 04/06/09

0.9.2

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#1232 Article URL encoding changing when returning from General Comment form. ambra closed fixed 0.9.1_rc1 clarification medium rich 04/06/09
#1255 FF2: Info icon displays with the text "Info" overlayed on top. ambra closed fixed 0.9.1_rc1 defect medium rich 04/03/09
#1247 Disproportionately large Digg logo on CompBiol articles ambra closed fixed 0.9.1_rc1 defect medium rich 04/03/09
#1250 Trackbacks not showing up on articles ambra closed fixed 0.9.1_rc1 clarification high rich 04/03/09
#1111 converted a note to a minor correction - note was deleted ambra closed duplicate 0.9.1_rc1 clarification low rich 04/03/09
#1240 404 for dijit_rtl.css on article/comment/related pages ambra closed fixed clarification unassigned rich 04/03/09
#1254 Remove ability to Advanced Search by date from Ambra ambra closed fixed 0.9.1_rc1 clarification critical rich 04/03/09
#1248 textSearchAtLeastOne is undefined in journals/plosone/search/searchStart.ftl ambra closed fixed 0.9.1_rc1 clarification medium rich 04/03/09
#1246 Freemarker error with divide by zero ambra closed fixed 0.9.1_rc1 clarification medium rich 04/03/09
#1233 Adding notes to equation numbers renders the note unreadable ambra closed fixed 0.9.1_rc1 clarification low rich 04/03/09
#1131 test performance during cache bootstrap ambra closed wontfix 0.9.1_rc1 clarification low rich 04/03/09
#1244 Comments ending in URLs are cut off ambra closed wontfix 0.9.1_rc1 defect low josowski 04/01/09
#1092 create admin user requires ambra restart to take effect ambra closed fixed clarification medium npeterson 03/31/09
#1236 Article titles incorrectly italicized ambra closed fixed 0.9.1_rc1 clarification critical rich 03/27/09
#1225 Remove date range from advanced search ambra closed fixed 0.9.1_rc1 clarification critical stoomey 03/26/09
#1164 Competing interest statement display in annotations ambra closed fixed 0.9.1_rc1 clarification high rich 03/25/09
#1234 Jump to Menu display issue ambra closed fixed 0.9.1_rc1 clarification medium rich 03/25/09
#1237 Rollover text - Related Content vs. Related Information ambra closed fixed 0.9.1_rc1 clarification medium rich 03/25/09
#1150 Add type Issue to article feed for eToc scripts ambra closed fixed 0.9.1_rc1 enhancement high wtoconnor 03/25/09
#1229 Formal Correction link stubbed out ambra closed wontfix 0.9.1_rc1 clarification critical rich 03/25/09
#1231 Typo in the annotation pop-up ambra closed fixed 0.9.1_rc1 clarification high rich 03/25/09
#1235 No competing interest statement statement wrong on ratings ambra closed duplicate 0.9.1_rc1 defect high josowski 03/25/09
#1196 manage virtual journals set current issue ambra closed wontfix 0.9.1_rc1 clarification high rich 03/24/09
#1228 Adding a new Issue to an existing Volume removes all Articles for all Issues in the existing Volume until ObjectCache and BrowseCache are cleared ambra closed fixed 0.9.1_rc1 clarification critical rich 03/24/09
#1211 Admin Panel - Unable to Manually Order Articles ambra closed fixed 0.9.1_rc1 clarification critical rich 03/24/09
#1218 Manage Issues - Can't reorder more than 12 issues ambra closed fixed 0.9.1_rc1 clarification medium rich 03/24/09
#1201 Re-order Issue removes all articles from that issue ambra closed fixed 0.9.1_rc1 clarification critical rich 03/24/09
#1198 delete article needs to return package to the ingestion-queue ambra closed fixed 0.9.1_rc1 clarification critical rich 03/24/09
#1217 simpleSearch.action results display XML markup ambra closed fixed 0.9.1_rc1 clarification medium rich 03/24/09
#1223 Comment out all article type blurb icons ambra closed wontfix 0.9.1_rc1 clarification high rich 03/24/09
#1224 Change "Related" tab text to "Related Content" ambra closed fixed 0.9.1_rc1 clarification high rich 03/24/09
#1172 for automatically ordered issue, issue feed ordering is different from browseIssue ordering ambra closed fixed 0.9.1_rc1 clarification low rich 03/24/09
#1176 Advanced Search - creator AND results incorrect ambra closed fixed 0.9.1_rc1 defect unassigned ronald 03/24/09
#1219 Long URLS are not line breaking ambra closed fixed 0.9.1_rc1 clarification low rich 03/24/09
#1208 Competing interests text automatically placed on old comments ambra closed fixed 0.9.1_rc1 clarification critical rich 03/24/09
#1220 Medicine displays wrong tagline in window title. ambra closed fixed 0.9.1_rc1 defect medium rich 03/23/09
#1186 CIS bolded lead-in ambra closed fixed 0.9.1_rc1 clarification low rich 03/23/09
#1210 Change Pubmed to PubMed on Related tab for an article ambra closed fixed 0.9.1_rc1 defect medium rich 03/23/09
#1171 Should not be able to add a note annotation to Abstract text ambra closed fixed 0.9.1_rc1 clarification medium rich 03/23/09
#1206 Update link in Rating instruction text ambra closed fixed 0.9.1_rc1 clarification medium rich 03/23/09
#1204 Related articles missing <italic> ambra closed fixed 0.9.1_rc1 clarification high rich 03/23/09
#1205 Update to 'Published In' block ambra closed fixed 0.9.1_rc1 clarification high rich 03/23/09
#1188 Cross published articles need "Published in <journal>" text/link ambra closed fixed 0.9.1_rc1 clarification high rich 03/23/09
#1155 Safari 3, Windows - annotations, corrections, retractions not displayed on article page ambra closed wontfix 0.9.1_rc1 clarification low rich 03/23/09
#1181 Digg not accepting article bookmarks ambra closed fixed 0.9.1_rc1 defect low rich 03/23/09
#1165 ONE template is displaying all the hidden elements. ambra closed fixed 0.9.1_rc1 clarification high rich 03/23/09
#1152 Issue add article broken ambra closed fixed 0.9.1_rc1 defect medium wtoconnor 03/23/09
#1185 Force Ingest of articles does not work ambra closed fixed 0.9.1_rc1 clarification critical rich 03/22/09
#1199 creating issue fails ambra closed fixed 0.9.1_rc1 defect critical dragisak 03/22/09
#1174 Update to content in related tab ambra closed fixed 0.9.1_rc1 clarification high rich 03/22/09
#1202 Clearing Image URI in ISsue Management Fails ambra closed fixed 0.9.1_rc1 clarification high rich 03/22/09
#1145 can't click into fields in ambra-registration register.action with IE6, lost left/right gutters in all pages in ambra-registration and cas webapps ambra closed fixed 0.9.1_rc1 clarification high rich 03/22/09
#1193 delete articles from issue using article URI field ambra closed fixed 0.9.1_rc1 clarification critical rich 03/22/09
#1191 Can add articles directly to Article URI list ambra closed fixed 0.9.1_rc1 clarification critical rich 03/22/09
#1212 Medicine - email article form: background color is wrong ambra closed fixed 0.9.1_rc1 clarification low rich 03/22/09
#1207 Can only post one Note and GSOD ambra closed fixed 0.9.1_rc1 clarification critical rich 03/22/09
#1139 Admin console exception - SAXParseException: Premature end of file ambra closed fixed 0.9.1_rc1 clarification critical rich 03/22/09
#1125 create "issue" feed that follows issue ordering ambra closed duplicate 0.9.1_rc2-SNAPSHOT enhancement medium russ 03/20/09
#1214 eLetters to Annotations migration HTML rendering of hyperlink ambra closed invalid 0.9.1_rc1 defect high russ 03/20/09
#1170 Note dialog containing guidelines needs a close button ambra closed fixed 0.9.1_rc1 clarification critical rich 03/20/09
#1209 Advanced search "AND" operator is broken ambra closed duplicate 0.9.1_rc1 defect high rich 03/20/09
#1177 Allow feed of type=Issue to default to current Issue if issueURI is not specified. ambra closed fixed 0.9.1_rc1 defect unassigned russ 03/20/09
#1144 XML test failures on windows ambra closed fixed 0.9.1_rc1 clarification low russ 03/20/09
#1194 delete article failing ambra closed fixed 0.9.1_rc1 defect critical rich 03/19/09
#1168 Duplicated acknowledgments on the article pages ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1110 Indicate formal correction or retraction annotation in browseIssue.action ambra closed fixed 0.9.1_rc1 clarification low rich 03/19/09
#1173 can't figure out how to edit/order issue ambra closed fixed 0.9.1_rc1 defect high rich 03/19/09
#1189 list of cross published articles need to be links ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1192 article URI needs to be linked ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1180 Article titles not correctly italicized on article pages ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1187 Article blurb icon only shows in Related/Comments tab ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1166 browseIssue.action bugs - spacing and "0" after author anmes ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1162 Rating links change to javascript:void(0); when logged in ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1190 Browse by Pub Date slowness after cross publishing ambra closed worksforme 0.9.1_rc1 clarification critical rich 03/19/09
#1183 Jump to Menu UI issue ambra closed fixed 0.9.1_rc1 clarification low rich 03/19/09
#1153 IE6, IE7, FF2 - error block on notation and rating form has no bottom margin ambra closed fixed 0.9.1_rc1 clarification low rich 03/19/09
#1151 IE6, IE7, FF2 - notation and ratings forms, right column of forms is aligned top ambra closed fixed 0.9.1_rc1 clarification low rich 03/19/09
#1161 Included in collections block in article rhc related content block is using wrong style ambra closed fixed 0.9.1_rc1 clarification medium rich 03/19/09
#1146 IE6 - tabs overlap title on article page ambra closed fixed 0.9.1_rc1 clarification medium rich 03/19/09
#1148 IE6, IE7 - general comment form display broken ambra closed fixed 0.9.1_rc1 clarification high rich 03/19/09
#1195 error on ordering issues in a volume ambra closed wontfix 0.9.1_rc1 defect critical wtoconnor 03/19/09
#1137 Retractions link is missing in the article comments tab ambra closed fixed 0.9.1_rc2-SNAPSHOT clarification high rich 03/18/09
#1182 Setter and Getters not conforming to Java Bean Spec ambra closed fixed 0.9.1_rc1 defect high wtoconnor 03/18/09
#1147 articleGrpListToCSV does not add comma between article types. ambra closed fixed 0.9.1_rc1 clarification critical rich 03/18/09
#1109 Allow manual ordering of articles for browseIssue.action ambra closed fixed 0.9.1_rc1 clarification critical rich 03/18/09
#1149 Cross Publishing after ingest allows cross publishing of articles that are part of the journal ambra closed fixed 0.9.1_rc1 clarification critical rich 03/18/09
#1154 Error block on notation and rating form remains visible if posting is canceled. ambra closed fixed 0.9.1_rc1 clarification medium rich 03/18/09
#1179 "PLoS" should not be italicized in Related Content box ambra closed fixed 0.9.1_rc1 clarification high rich 03/18/09
#1169 Text for notes dialog on areas that can't be annotated ambra closed fixed 0.9.1_rc1 clarification high rich 03/18/09
#1167 Link to 'Competing Interest page' incorrect ambra closed fixed 0.9.1_rc1 clarification high rich 03/18/09
#1159 IE6, IE7 - advanced search subject categories radio buttons broken ambra closed fixed 0.9.1_rc1 clarification high rich 03/18/09
#787 retraction annotation ambra closed fixed 0.9.1-SNAPSHOT clarification medium rich 03/18/09
#1124 Author order incorrect in search results ambra closed fixed 0.9.1_rc1 defect high ronald 03/17/09
#1157 PLoS ONE - simple search sometimes results in site error ambra closed fixed 0.9.1_rc1 defect high rich 03/17/09
#1160 Related content block on article page RHC should only display subject categories for ONE articles. ambra closed fixed 0.9.1_rc1 clarification high rich 03/16/09
#1156 Browse by Subject - number of articles in category missing on PLoS ONE ambra closed invalid 0.9.1_rc1 defect high russ 03/16/09
#1052 Custom configuration for recently published article block ambra closed fixed 0.9.1-SNAPSHOT clarification medium rich 03/16/09
#1076 Selection of recent articles for display on a journal front page ambra closed fixed 0.9.1-SNAPSHOT clarification medium rich 03/16/09
#1141 Invalid link sent to the secureRedirect.action from Related or Comments tab ambra closed fixed 0.9.1_rc1 clarification high rich 03/16/09
#1115 Article Page Redesign ambra closed fixed 0.9.1_rc1 clarification critical rich 03/16/09
#1118 Article sub pages need a standard link back to the article. ambra closed fixed 0.9 clarification low rich 03/13/09
#1133 Article page link to issue ambra closed fixed 0.9.1_rc1 clarification medium rich 03/11/09
#1136 Competing Interest Statement ambra closed fixed 0.9.1_rc1 clarification high rich 03/11/09
#1062 Advanced Search page: error displaying previous query terms ambra closed fixed 0.9 clarification medium rich 03/11/09
#1138 Annotation with Competing Interest flagged as "correction" creates duplicate annotations ambra closed fixed 0.9.1_rc1 clarification high rich 03/11/09
#104 Handling different forms of copyright in NLM DTD 2.3 ambra closed fixed 0.5-SNAPSHOT clarification high rich 03/09/09
#1031 Support for NLM DTD 2.3 in entity resolver cache ambra closed fixed 0.9-rc1 clarification critical rich 03/09/09
#1119 Usability of slideshow - link back to article for search referers ambra closed fixed 0.9 clarification low rich 03/09/09
#1099 Search queries resulting in long processing before results returned topaz closed fixed 0.9.1_rc1 defect critical ronald 03/09/09
#1121 Article Type Blurbs ambra closed fixed 0.9 clarification low rich 03/09/09
#997 Update javascript [dojo] in the ambra/registration/webapp project ambra closed fixed 0.9-rc2-SNAPSHOT clarification high rich 03/09/09
#1101 editAnnotationLoad.action is broken ambra closed fixed 0.9.1_rc1 clarification medium rich 03/05/09
#1112 Advanced Search: improve client-side date validation ambra closed fixed 0.9.1_rc1 clarification medium rich 03/02/09
#1087 Update Dojo to latest point release (1.2.3) ambra closed fixed 0.9.1-SNAPSHOT clarification critical rich 02/27/09
#1089 search migration results in many WARNs in mulgara log about insert failures ambra closed wontfix 0.9.1_rc1 clarification low ronald 02/12/09
#875 RH nav bar too long for page if article contains many sections ambra closed wontfix 0.8.2.1 clarification medium stoomey 02/12/09
#1050 Garbage collection and other maintenance in Ambra's mulgara database after 0.9.1 deployment ambra closed fixed 0.9.1-SNAPSHOT defect critical russ 02/04/09
#1010 add article type restriction to home page recent article block ambra closed duplicate 0.9-rc2-SNAPSHOT task unassigned rich 12/10/08
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Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#345 Move Plos Registration database to Mulgara ambra-sso new None 0.9.1-SNAPSHOT enhancement critical dragisak 02/02/09
#653 trackback spam filter is too conservative ambra new None 0.8.2-SNAPSHOT enhancement critical 06/23/08
#675 Admin application needs to handle journals better. ambra new None 0.8 enhancement critical dragisak 12/19/08
#724 automate volume/issue collections on ingest ambra new None task critical dragisak 12/19/08
#854 Ambra Webapp Integration Tests ambra new None 0.8.3-SNAPSHOT task critical dragisak 12/19/08
#910 Fix and rework user handling ambra new 0.9-SNAPSHOT defect critical dragisak 12/20/08
#972 standardize parameter names for actions ambra new None 0.9-SNAPSHOT task critical dragisak 12/19/08
#1034 Remove all TQL queries in Ambra ambra new None 0.9-rc1 defect critical ronald 12/20/08
#1197 unable to order volumes withing a journal ambra new None 0.9.1_rc1 clarification critical npeterson 04/28/09
#407 push email change through to mulgara in emailConfirmationSuccess.action - do not require user to logout and then log back in to propagate change to mulgara ambra-sso new None 0.7 defect high dragisak 12/20/08
#614 Email address(es) specified for correspondence with article's creators is not being migrated or ingested ambra new 0.8 task high rich 03/18/08
#690 pull image attribution info from the cover image article and display on TOC page ambra new None 0.8 enhancement high wtoconnor 02/02/09
#783 Correction annotations outside of <body> element. ambra new None 0.8.2.1 task high josowski 12/10/08
#1039 Use Composite View Pattern / Tiles in Ambra ambra new None task high dragisak 12/20/08
#1061 Move generation of xref xml blob outside of Ambra. ambra new None 0.9.1-SNAPSHOT defect high dragisak 12/03/08
#1184 Updated the anchor codes for Article Blurbs ambra new None 0.9.1_rc1 enhancement high rich 03/19/09
#1216 ONE homepage timeout ambra new None 0.9.1_rc1 clarification high rich 03/24/09
#1303 deleting a volume in admin panel orphans the issues ambra new None 0.9.3 defect high npeterson 05/11/09
#1311 Provide a way to override configuration file for embedded Mulgara topaz-mulgara new None enhancement high dragisak 12/21/09
#421 Upgrade CAS to 3.3.1 ambra-sso new None 0.7 task medium 03/02/09
#440 Rating content model need fixing. ambra new None 0.7 defect medium dragisak 04/01/09
#502 Add references (cited articles etc.) to the article feed data ambra new None 0.7 enhancement medium wtoconnor 10/23/08
#593 group authors do not show up in feed ambra new None 0.7 defect medium wtoconnor 12/08/08
#600 handle multiple abstracts correctly on ingest ambra new None 0.8 task medium dragisak 02/02/09
#641 bad behavior when user tries to annotate in acknowledgement section illegal area ambra new None 0.8 defect medium josowski 12/19/08
#718 Ambra should register a TemplateExceptionHandler to avoid Exception traces as Results in Templates ambra new None 0.8.2-SNAPSHOT defect medium dragisak 12/19/08
#858 cache search ambra new None 0.8.2.1 enhancement medium wtoconnor 12/19/08
#859 placing a note directly on a reference link breaks the link ambra new None 0.8.2.1 defect medium josowski 12/19/08
#990 Invalid annotation URI supplied to listReplyAction ambra new None 0.9-rc1 defect medium josowski 12/19/08
#1007 article "linkback" URL on listThread.action uses deprecated fetchArticle.action format ambra new None 0.9-rc2-SNAPSHOT defect medium rich 08/11/08
#1019 note range select bug in firefox 3.0 ambra new None 0.9-rc2-SNAPSHOT defect medium josowski 04/06/09
#1021 'between' criterion or a generic 'alias' criterion that allows alternate $s and $varPrefix topaz new None 0.9-rc1 enhancement medium pag 08/13/09
#1051 improve feedCache invalidation ambra new None 0.9.1-SNAPSHOT task medium rich 03/30/09
#1056 Must always create definitions for superseded properties (even when not annotated) topaz new None 0.9.1-SNAPSHOT defect medium pag 08/13/09
#1060 Filter out rows from OQL result if all columns are null topaz new None 0.9.1-SNAPSHOT defect medium pag 08/13/09
#1116 Change author e-mail to comply with NLM DTD 2.3 ambra new None 0.9.1_rc1 enhancement medium rich 03/10/09
#1128 users with + in email address are given invalid verification URLs ambra-sso new None 0.9.1_rc1 defect medium rich 02/24/09
#1140 Mulgara query returns UnhandledException Error ambra new None 0.9.1_rc1 defect medium dragisak 03/14/09
#1142 prepare-sip sax error ambra new None 0.9.1_rc1 defect medium rich 03/12/09
#1143 prepare-sip creates a bad MANIFEST.xml ambra new None 0.9.1_rc1 defect medium npeterson 03/13/09
#1158 IE6 - Advanced search form date range calendar position is wrong ambra new None 0.9.1_rc1 clarification medium josowski 04/01/09
#1226 r7512 adds links that don't point to a valid destination ambra new None defect medium rich 03/24/09
#1227 r7512 adds absolute pathed URLs that don't work in a build ambra new None defect medium rich 03/24/09
#1249 Search on article abstract does not find expected results ambra new None 0.9.1_rc1 defect medium ronald 03/30/09
#402 Redesign of RA abstract and summary sections ambra new None 0.8.2-SNAPSHOT enhancement low stoomey 03/13/09
#567 add 'delete' button to editAnnotation page ambra new None 0.8 enhancement low wtoconnor 12/19/08
#618 make article URL human friendly - no escaped characters and as short as possible ambra new 0.8 enhancement low rich 09/11/08
#698 Need a way to return the language tag associated with an RDF string literal. topaz new None 0.8.2-SNAPSHOT enhancement low pag 08/13/09
#719 dynamic title for browseIssue ambra assigned None 0.8.2-SNAPSHOT task low wtoconnor 04/28/09
#741 Struts 2 URLHelper bug ambra new None defect low dragisak 12/19/08
#746 fix lazy loading browse cache without losing related performance gains ambra new None 0.8.2-SNAPSHOT enhancement low dragisak 12/19/08
#818 Change the Embedded class concept: instead of treating them as values ala Hibernate, treat them as Entities too. topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#819 Criteria should allow childCriteria() creation for embedded classes in addition to using '.' as a separator. topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#820 Use ontologies to store content model info and have references to them from ClassMetadata etc. topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#821 Restrictions as sub-classes topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#823 Support tx recovery in OTM for local transactions topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#824 Support tx recovery in OTM for global transactions topaz new None 0.8.3-SNAPSHOT unassigned low pag 08/13/09
#840 Mapper selection needs to be revisited topaz new None 0.8.2.1 enhancement low pag 08/13/09
#883 View Projection var serialization is POJO specific. topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#884 @PredicateMap improvements topaz new None 0.8.3-SNAPSHOT enhancement low pag 08/13/09
#885 Definition updates as an undoable set topaz new None 0.8.2.1 enhancement low pag 08/13/09
#932 Roll back r5648 after move to JDK 1.6 ambra new None 0.9-SNAPSHOT defect low 11/17/08
#939 New tests in OTM needed for Interceptor topaz new None 0.9-SNAPSHOT task low dragisak 08/13/09
#981 'see all ratings' needs paging ambra assigned None 0.9-SNAPSHOT enhancement low stoomey 03/13/09
#1001 AllegroGraph connector? topaz new None 0.9-rc1 enhancement low pag 08/13/09
#1020 when editing a user through the admin pages, user cache is not cleared for logged in user ambra new None 0.9-rc2-SNAPSHOT defect low rich 08/29/08
#1035 Delete Criterias completely as an option in Topaz topaz new None 0.9-rc1 enhancement low pag 08/13/09
#1036 Register all store resources at begin of transaction topaz new None 0.9-rc1 defect low pag 08/13/09
#1044 StringCompareResolver should use new "DefaultGraphs" feature in mulgara topaz new None 0.9-rc1 enhancement low pag 08/13/09
#1045 Use default graphs for xsd and prefix graphs topaz new None 0.9-rc1 enhancement low pag 08/13/09
#1049 runitql swallows data types of literals topaz new None 0.9.1-SNAPSHOT enhancement low pag 08/13/09
#1054 Register a default 'Top' level object in Topaz by default. Similar to owl:Thing and Object in Java. topaz new None 0.9.1-SNAPSHOT enhancement low pag 08/13/09
#1055 Move preload() and preloadFromSearch() out of SessionFactory topaz new None 0.9.1-SNAPSHOT enhancement low pag 08/13/09
#1057 Clean up metadata definitions and mapping topaz new None 0.9.1-SNAPSHOT task low pag 08/13/09
#1059 Stores must do queries for Session.get() in sub-class graphs also. topaz new None 0.9.1-SNAPSHOT enhancement low pag 08/13/09
#1067 Add Akubra as blob store to Ambra. topaz new None 0.9.1-SNAPSHOT enhancement low pag 08/13/09
#1078 Formal correction text overlaps with list number ambra new None 0.9.1-SNAPSHOT defect low josowski 02/25/09
#1203 Deletion of an Article does not update Issues list of articles. ambra new None 0.9.1_rc1 enhancement low wtoconnor 03/24/09
#1213 delete volume without deleting issues ambra new None 0.9.1_rc1 defect low wtoconnor 04/01/09
#1221 adminTop annotation links don't respect journal context ambra new None 0.9.1_rc2-SNAPSHOT defect low rich 03/23/09
#1222 editAnnotation action doesn't work in edge case ambra new None 0.9.1_rc1 defect low rich 03/23/09
#1241 Competing Interest Statement Radio button text ambra new None enhancement low josowski 04/01/09
#1243 Relative URI's not properly handled topaz-mulgara new None 0.9.1_rc1 defect low pag 04/14/09
#1272 Embedded mulgara shutdown problem topaz-mulgara new None 0.9.2 defect low pag 08/13/09
#145 Implement profile access-control tests ambra new None 0.5-SNAPSHOT defect unassigned dragisak 12/19/08
#781 findArticle.action constructs invalid pubmed search URLs in some cases ambra new None 0.8.2 defect unassigned ssterling 12/19/08
#871 Admin interface to change a user's password ambra new None 0.8.2.1 enhancement unassigned ssterling 12/19/08
#872 discussion thread: too many RE:'s ambra new None 0.8.2.1 enhancement unassigned ssterling 12/19/08
#899 extend DOI resolver to handle supplementary-material ambra new None 0.8.2.1 enhancement unassigned rich 12/19/08
#974 dummy/login page has incorrect help text ambra-sso new None 0.8.2.1 task unassigned pradeep 08/01/08
#985 it is impossible to remove all issues from a volume ambra new None 0.9-SNAPSHOT defect unassigned rich 07/09/08
#1009 add PMC article-type to extended feed ambra new None 0.9-rc2-SNAPSHOT task unassigned wtoconnor 10/23/08
#1013 cas login page is wide in IE6 ambra-sso new None 0.9-rc2-SNAPSHOT clarification unassigned rich 03/19/09
#1015 include issn in extended feed ambra new None 0.9-rc1 task unassigned wtoconnor 10/31/08
#1018 return a helpful error if user tries to verify their email address twice ambra-sso new None 0.9-rc1 defect unassigned pradeep 08/22/08
#1042 Tombstone Annotations, Replies and Ratings ambra new None 0.9-rc1 task unassigned dragisak 11/08/08
#1043 Modification of annotations should result in creation of superseded versions. ambra new None 0.9-rc1 task unassigned dragisak 10/23/08
#1064 prepare-sip: better handling of tar.gz packages ambra new None 0.9.1-SNAPSHOT enhancement unassigned pradeep 12/08/08
#1077 CrossRef XSL: if no object-id, don't include component ambra new None 0.9.1-SNAPSHOT defect unassigned dragisak 12/31/08
#1079 article_content.ftl DOI Resolver Link ambra new None 0.9.1-SNAPSHOT task unassigned 01/02/09
#1080 article_content.ftl docURL Setting ambra new None 0.9.1-SNAPSHOT task unassigned 01/02/09
#1081 Sending abstract to Digg.com in artle_content.ftl ambra new None 0.9.1-SNAPSHOT task unassigned 01/02/09
#1091 feed cache keys are not invalidated correctly on article publish ambra new None 0.9.1_rc1 defect unassigned rich 02/23/09
#1093 transient error viewing annotations ambra new None 0.9.1_rc1 defect unassigned rich 02/02/09
#1123 genericize prepare-sip ambra new None 0.9.1_rc1 task unassigned rich 02/23/09
#1238 favicon URL in feed is bad ambra new None defect unassigned rich 03/25/09
#1239 get rid of config.ambra.platform.cisStartDate ambra new None task unassigned rich 03/26/09
#1242 Annotation window positioning after error ambra new None defect unassigned josowski 04/01/09
#1252 track outgoing links with google analytics ambra new None enhancement unassigned rich 03/30/09
#1253 improve validation in prepare-sip ambra new None enhancement unassigned rich 03/30/09
#1301 removing crosspubbed article doesn't clean up after itself ambra new None 0.9.3 defect unassigned npeterson 05/05/09
#1306 test ambra new None 0.9.2 defect unassigned dragisak 05/14/09
#1307 Test ambra new None 0.9.2 defect unassigned dragisak 05/21/09
#1310 Change search OQL to make queries faster ambra new None 0.9.3 defect unassigned dragisak 08/12/09
#1312 type=PropType.DATA should be implicitly guessed for user-defined serializable literals topaz new None 0.9.3 defect unassigned pradeep 05/20/11
#1114 Upgrade Groovy to 1.5.8 (when available) topaz closed fixed 0.9 defect low pag 09/04/09
#538 Text for copyright statement associated with PLoS feeds in the publishing applicaiton. legal closed wontfix 0.8 task critical rich 08/13/09
#630 Masthead questions information-model closed wontfix 0.8 enhancement high rich 08/13/09
#1309 Search is slow when Lucene writes to disk topaz-mulgara closed duplicate 0.9.3 defect high ronald 08/13/09
#1094 mulgara doesn't start on boot topaz-mulgara closed duplicate 0.9.1_rc1 defect unassigned rich 08/13/09
#1048 runitql swallows uri fragments topaz closed duplicate 0.9.1-SNAPSHOT defect high ronald 08/13/09
#1308 Assigning admin privileges to user with DummuSSO breaks ambra security ambra closed duplicate 0.9.2 defect unassigned dragisak 07/10/09
#1175 Adding a note to a hyperlink removes the hyperlink. ambra closed duplicate 0.9.1_rc1 clarification medium josowski 04/06/09
#564 browse by subject pages should include the main feed as well as the subject feed in the <head> section ambra closed wontfix 0.8 enhancement low russ 04/03/09
#565 browse pages should have a feedicon and link to the feed as well as a feed link in <head> ambra closed wontfix 0.8 enhancement medium russ 04/03/09
#927 use overlay journal name as title of admin pages ambra closed duplicate 0.9-SNAPSHOT task unassigned russ 04/01/09
#926 global default journal - get rid of requirement to configure overlay journal ambra closed wontfix 0.9-SNAPSHOT enhancement critical pradeep 03/30/09
#717 add plos article type, related articles to feed, add group by article type sorting option ambra closed duplicate 0.8.1 enhancement high russ 03/30/09
#640 annotations in the paragraphs following equations are placed incorrectly ambra closed duplicate 0.8 defect high josowski 03/27/09
#1129 IE6 - Can't select subject categories in advanced search ambra closed duplicate 0.9 clarification low rich 03/25/09
#931 extend cascading file lookup filter to freemarker templates ambra closed duplicate 0.9-SNAPSHOT enhancement high 02/26/09
#1006 it's bad to have ambra.virtualJournals.JournalName.url defined in template ambra closed fixed 0.9-rc1 defect unassigned russ 02/23/09
#982 Add HTTP exires header to served static resources ambra closed wontfix enhancement medium russ 02/09/09
#869 Browse by Date: use most recent pub date as the endDate for "past week", "past month", and "past 3 months" ambra closed wontfix 0.8.2.1 task high 12/20/08
#725 configurable rating categories by article type ambra closed wontfix 0.8.2-SNAPSHOT enhancement high jsuttor 12/19/08
#1040 GraphConfig needs better javadoc and constructor for usability topaz closed fixed 0.9-rc1 defect medium pag 10/27/08
#1029 articles published since 0.9-final upgrade have bad links in search ambra closed fixed 0.9-rc1 defect critical rich 09/22/08
#657 we should be checking that the parameter is absolute before even sending to mulgara ambra closed worksforme 0.8 clarification medium russ 08/15/08
#1011 feedback link generates an infinite loop of unique links, trapping spiders ambra closed fixed 0.9-rc2-SNAPSHOT defect unassigned rich 08/12/08
#742 Rewrite the citation service in the PubApp to extract information from Mulgara rather then using XSL on the article. ambra closed duplicate 0.8.2-SNAPSHOT task medium jsuttor 08/05/08
#677 0.81: cannot look up user by id ambra closed duplicate 0.8 defect low jsuttor 07/31/08
#988 Javascript security warning on annotation display topaz closed fixed 0.9-rc1 defect unassigned jkirton 07/31/08
#861 it should not take ~100 mulgara queries to build an article ambra closed fixed 0.8.2.1 clarification high 07/17/08
#518 The PLoS web site could be speeded up using common best practices ambra closed fixed clarification high 07/17/08
#986 Annotation display messed up ambra closed duplicate 0.9-rc1 defect unassigned jkirton 07/17/08
#983 indexArticles.groovy script broken ambra closed fixed 0.9-SNAPSHOT defect unassigned rich 07/09/08
#888 Advanced Search not applying journal filter ambra closed duplicate 0.8.2.1 defect critical 06/23/08
#909 change how advanced search page populates fields when user clicks "go to advanced search" ambra closed fixed 0.8.2.2-SNAPSHOT defect low jkirton 06/23/08
#902 Ingest tests publishing-app-testing closed wontfix 0.8.3-SNAPSHOT task unassigned 06/19/08
#935 article_delete script fails if it can't find a .zip file to move from ingested to ingestion-queue ambra closed invalid 0.8.2.1 defect unassigned russ 06/19/08
#550 articles left in inconsistent state on some ingest errors ambra closed wontfix 0.8 defect low jsuttor 06/12/08
#766 recover gracefully on article delete if file cannot be moved from ingested to ingestion-queue ambra closed fixed 0.8.2-SNAPSHOT defect unassigned jsuttor 06/12/08
#226 Need to take a look at Tupelo topaz closed invalid 0.5-SNAPSHOT task high amit 06/12/08
#802 admin article delete function leaves articles in an inconsistent state on failure ambra closed fixed 0.8.2.1-SNAPSHOT defect high alex 06/12/08
#812 if pub-app thread has been waiting for a long time (>60s?) it should give up gracefully without opening a mulgara session ambra closed wontfix 0.8.2.1-SNAPSHOT enhancement critical alex 06/12/08
#807 bring ehcache up on fedora ambra closed wontfix 0.8.2.1-SNAPSHOT task medium jsuttor 06/12/08
#963 on ingest error, article still moved into ingested queue ambra closed fixed 0.9-SNAPSHOT unassigned unassigned rich 06/11/08
#610 on article delete, remove relevant cache keys and and remove article from any collections (journal or issue) it belongs to ambra closed duplicate 0.8.2-SNAPSHOT task medium alex 06/09/08
#705 /user/secure/assignAdminRole.action no longer works ambra closed duplicate 0.9-SNAPSHOT defect medium jsuttor 06/06/08
#772 pub-app should respect config.pub.virtualJournals.journals list when pulling in config.freemarker properties ambra closed duplicate 0.8.2-SNAPSHOT enhancement low jsuttor 04/22/08
#863 cache reply threads for annotations in listThread.action ambra closed invalid 0.8.2.2-SNAPSHOT enhancement medium jsuttor 04/11/08
#805 on certain ingests, browse cache entries are corrupted and article will not display ambra closed worksforme 0.8.2.1-SNAPSHOT unassigned low jsuttor 04/07/08
#764 Get rid of InitializeSessionOnLoginFilter ambra closed fixed 0.8.2-SNAPSHOT enhancement