Ticket #286 (closed defect: fixed)

Opened 2 years ago

Last modified 2 years ago

annotated.groovy is dumping article categories instead of article title

Reported by: russ Assigned to: ebrown
Priority: medium Milestone:
Component: topaz Version:
Keywords: topaz-tools groovy annotated Cc:
Blocking: Blocked By:

Description

howdy.

i just tried out the annotated.groovy script on plosfail01:

/usr/local/topaz/bin/rungroovy /usr/local/topaz/scripts/annotated.groovy -F localhost:9090 -M localhost:9091

which produced the following result:

"info:doi/10.1371/journal.pone.0000004","Genetics and Genomics/Gene TherapyCell? Biology/Gene ExpressionMolecular? Biology/Transcription Initiation and ActivationDevelopmental? Biology/Stem CellsGenetics? and Genomics/Functional Genomics","ds10@sanger.ac.uk", 1.0 "info:doi/10.1371/journal.pone.0000101","Immunology/ImmunomodulationInfectious Diseases/Epidemiology and Control of Infectious DiseasesInfectious? Diseases/Viral InfectionsInfectious? Diseases/HIV Infection and AIDSEvidence-Based Healthcare/Health Services Research and EconomicsPublic? Health and Epidemiology/Immunization","p.aaby@bandim.org", 1.0

it is correct, according to the most annotated block, that only two annotations exist on plosone-stage in articles 4 and 101.

however, it looks like we have subject categories instead of titles.

if a quick fix ahead of the next release is possible, that would be appreciated.

thanks!

Dependency Graph

Change History

02/16/07 14:56:24 changed by ebrown

  • status changed from new to assigned.

Interesting. I'm surprised I missed that. The fix is trivial. It is in /tmp on plosfail01 right now if you want to try it. But it raised another issue with some markup in the title. I'll try to fix that in the same checkin.

02/19/07 09:57:33 changed by ebrown

  • status changed from assigned to closed.
  • resolution set to fixed.

(In [2359]) fixes #286 Display article titles instead of subjects

While fixing this I also found that some titles were returned with HTML entities. So I stripped those too.