i reported an annotation, and then tried to remove it by checking "delete sub thread" and hitting submit.
i got a site error and the annotation was still visible, but no longer flagged.
2007-05-30 17:45:59,866 WARN UnhandledException> error performing query: select $s from <local:///topazproject#filter:model=ri> where $s <rdf:type> <http://
www.w3.org/2001/03/thread#Reply> and $s <http://www.w3.org/2001/03/thread#root> <info:doi/10.1371/annotation/ab621e9d-82a2-45b1-9cde-87f226b8e625> and walk(<
info:doi/10.1371/annotation/ab621e9d-82a2-45b1-9cde-87f226b8e625> <http://www.w3.org/2001/03/thread#inReplyTo> $s in <local:///topazproject#filter:model=ri>
and $t1 <http://www.w3.org/2001/03/thread#inReplyTo> $s in <local:///topazproject#filter:model=ri>) ; [TP-Processor8 org.plos.UnhandledException]
org.topazproject.otm.OtmException: error performing query: select $s from <local:///topazproject#filter:model=ri> where $s <rdf:type> <http://www.w3.org/2001
/03/thread#Reply> and $s <http://www.w3.org/2001/03/thread#root> <info:doi/10.1371/annotation/ab621e9d-82a2-45b1-9cde-87f226b8e625> and walk(<info:doi/10.137
1/annotation/ab621e9d-82a2-45b1-9cde-87f226b8e625> <http://www.w3.org/2001/03/thread#inReplyTo> $s in <local:///topazproject#filter:model=ri> and $t1 <http:/
/www.w3.org/2001/03/thread#inReplyTo> $s in <local:///topazproject#filter:model=ri>) ;
at org.topazproject.otm.stores.ItqlStore.list(ItqlStore.java:604)
at org.topazproject.otm.Session.list(Session.java:400)
at org.topazproject.otm.Criteria.list(Criteria.java:137)
at org.plos.annotation.service.ReplyWebService$4.run(ReplyWebService.java:220)
at org.plos.annotation.service.ReplyWebService$4.run(ReplyWebService.java:219)
at org.plos.util.TransactionHelper.doInTx(TransactionHelper.java:57)
at org.plos.annotation.service.ReplyWebService.deleteReplies(ReplyWebService.java:216)
at org.plos.annotation.service.ReplyWebService$$FastClassByCGLIB$$f1ddcaf7.invoke(<generated>)
at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:674)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:154)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:126)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:114)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:176)
at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:615)
at org.plos.annotation.service.ReplyWebService$$EnhancerByCGLIB$$96bfbd2d.deleteReplies(<generated>)
at org.plos.admin.action.ProcessFlagsAction.deleteTarget(ProcessFlagsAction.java:146)
at org.plos.admin.action.ProcessFlagsAction.execute(ProcessFlagsAction.java:65)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at com.opensymphony.xwork.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:364)
at com.opensymphony.xwork.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:216)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:190)
at org.plos.user.EnsureRoleInterceptor.intercept(EnsureRoleInterceptor.java:47)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at org.plos.user.EnsureUserAccountInterceptor.getReturnCodeDependingOnDisplayName(EnsureUserAccountInterceptor.java:83)
at org.plos.user.EnsureUserAccountInterceptor.intercept(EnsureUserAccountInterceptor.java:58)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:168)
at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:115)
at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.webwork.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:171)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.webwork.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:147)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:151)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.TimerInterceptor.invokeUnderTiming(TimerInterceptor.java:131)
at com.opensymphony.xwork.interceptor.TimerInterceptor.intercept(TimerInterceptor.java:118)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:186)
at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
at com.opensymphony.xwork.DefaultActionProxy.execute(DefaultActionProxy.java:113)
at com.opensymphony.webwork.dispatcher.DispatcherUtils.serviceAction(DispatcherUtils.java:225)
at com.opensymphony.webwork.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:202)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
at org.plos.web.InitializeSessionOnLoginFilter.doFilter(InitializeSessionOnLoginFilter.java:74)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
at edu.yale.its.tp.cas.client.filter.CASFilter.doFilter(CASFilter.java:317)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:199)
at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:282)
at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767)
at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:697)
at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:889)
at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684)
at java.lang.Thread.run(Thread.java:595)
Caused by: javax.xml.soap.SOAPException: ItqlInterpreter error - org.mulgara.query.QueryException: Illegal in clause on transitive constraint.
Caused by: (QueryException) Illegal in clause on transitive constraint.
at org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
at org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
at org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:633)
at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanEndElement(XMLNSDocumentScannerImpl.java:719)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(XMLDocumentFragmentScannerImpl.java:1685
)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:368)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:834)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:764)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:148)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1242)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
at org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
at org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at org.topazproject.mulgara.itql.service.ItqlInterpreterBeanServicePortSoapBindingStub.executeQueryToString(ItqlInterpreterBeanServicePortSoapBinding
Stub.java:358)
at org.topazproject.mulgara.itql.ItqlHelper.doQuery(ItqlHelper.java:291)
at org.topazproject.otm.stores.ItqlStore.list(ItqlStore.java:602)
... 90 more
