Ticket #425 (closed defect: wontfix)

Opened 1 year ago

Last modified 1 year ago

published article is available on one stack, site error on another

Reported by: russ Assigned to: amit
Priority: high Milestone:
Component: topaz Version: 0.6
Keywords: xacml Cc:
Blocking: Blocked By:

Description

stack 1 shows the article, stack 2 does not: 

http://plosone-web01.plos.org/article/fetchArticle.action?articleURI=info%3Adoi%2F10.1371%2Fjournal.pone.0000526
http://plosone-web02.plos.org/article/fetchArticle.action?articleURI=info%3Adoi%2F10.1371%2Fjournal.pone.0000526

plosone.log shows a XACML error: 

2007-06-25 14:06:53,757 ERROR FetchArticleService> Transformation of article failed [TP-Processor48 org.plos.article.service.FetchArticleService]
AxisFault
 faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
 faultSubcode:
 faultString: java.lang.SecurityException: A XACML policy denied acess to info:doi/10.1371/journal.pone.0000526
 faultActor:
 faultNode:
 faultDetail:
        {http://xml.apache.org/axis/}hostname:plostopaz02.localdomain

java.lang.SecurityException: A XACML policy denied acess to info:doi/10.1371/journal.pone.0000526
        at org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
        at org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
        at org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
        at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:633)
        at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanEndElement(XMLNSDocumentScannerImpl.java:719)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(XMLDocumentFragmentScannerImpl.java:1685)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:368)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:834)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:764)
        at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:148)
        at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1242)
        at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
        at org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
        at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
        at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
        at org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnderstandChecker.java:62)
        at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
        at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
        at org.apache.axis.client.Call.invoke(Call.java:2767)
        at org.apache.axis.client.Call.invoke(Call.java:2443)
        at org.apache.axis.client.Call.invoke(Call.java:2366)
        at org.apache.axis.client.Call.invoke(Call.java:1812)
        at org.topazproject.ws.article.ArticleServicePortSoapBindingStub.getObjectURL(ArticleServicePortSoapBindingStub.java:603)
        at org.plos.article.service.ArticleWebService.getObjectURL(ArticleWebService.java:98)
        at org.plos.article.service.ArticleWebService$$FastClassByCGLIB$$c1438d02.invoke(<generated>)
        at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
        at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:674)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:154)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:126)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:114)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:176)
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:615)
        at org.plos.article.service.ArticleWebService$$EnhancerByCGLIB$$603d5683.getObjectURL(<generated>)
        at org.plos.article.service.FetchArticleService.getAnnotatedContentAsDocument(FetchArticleService.java:377)
        at org.plos.article.service.FetchArticleService.getAnnotatedContentAsDOMSource(FetchArticleService.java:322)
        at org.plos.article.service.FetchArticleService.getTransformedArticle(FetchArticleService.java:94)
        at org.plos.article.service.FetchArticleService.getURIAsHTML(FetchArticleService.java:137)
        at org.plos.article.service.FetchArticleService$$FastClassByCGLIB$$4912ea24.invoke(<generated>)
        at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
        at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:674)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:154)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:126)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:114)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:176)
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:615)
        at org.plos.article.service.FetchArticleService$$EnhancerByCGLIB$$f5d38725.getURIAsHTML(<generated>)
        at org.plos.article.action.FetchArticleAction.execute(FetchArticleAction.java:38)
        at sun.reflect.GeneratedMethodAccessor148.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.opensymphony.xwork.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:364)
        at com.opensymphony.xwork.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:216)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:190)
        at org.plos.user.EnsureUserAccountInterceptor.intercept(EnsureUserAccountInterceptor.java:49)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:168)
        at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:115)
        at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.webwork.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:171)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.webwork.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:147)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:151)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.TimerInterceptor.invokeUnderTiming(TimerInterceptor.java:131)
        at com.opensymphony.xwork.interceptor.TimerInterceptor.intercept(TimerInterceptor.java:118)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:186)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.DefaultActionProxy.execute(DefaultActionProxy.java:113)
        at com.opensymphony.webwork.dispatcher.DispatcherUtils.serviceAction(DispatcherUtils.java:225)
        at com.opensymphony.webwork.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
        at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:199)
        at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:282)
        at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767)
        at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:697)
        at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:889)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684)
        at java.lang.Thread.run(Thread.java:595)
2007-06-25 14:06:53,758 WARN  UnhandledException> Transformation of article failed [TP-Processor48 org.plos.UnhandledException]
org.plos.ApplicationException: Transformation of article failed
        at org.plos.article.service.FetchArticleService.getTransformedArticle(FetchArticleService.java:106)
        at org.plos.article.service.FetchArticleService.getURIAsHTML(FetchArticleService.java:137)
        at org.plos.article.service.FetchArticleService$$FastClassByCGLIB$$4912ea24.invoke(<generated>)
        at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
        at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:674)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:154)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:126)
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:114)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:176)
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:615)
        at org.plos.article.service.FetchArticleService$$EnhancerByCGLIB$$f5d38725.getURIAsHTML(<generated>)
        at org.plos.article.action.FetchArticleAction.execute(FetchArticleAction.java:38)
        at sun.reflect.GeneratedMethodAccessor148.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.opensymphony.xwork.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:364)
        at com.opensymphony.xwork.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:216)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:190)
        at org.plos.user.EnsureUserAccountInterceptor.intercept(EnsureUserAccountInterceptor.java:49)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:168)
        at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:115)
        at com.opensymphony.xwork.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.webwork.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:171)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.webwork.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:147)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:151)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.AroundInterceptor.intercept(AroundInterceptor.java:31)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.TimerInterceptor.invokeUnderTiming(TimerInterceptor.java:131)
        at com.opensymphony.xwork.interceptor.TimerInterceptor.intercept(TimerInterceptor.java:118)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:186)
        at com.opensymphony.xwork.DefaultActionInvocation.invoke(DefaultActionInvocation.java:188)
        at com.opensymphony.xwork.DefaultActionProxy.execute(DefaultActionProxy.java:113)
        at com.opensymphony.webwork.dispatcher.DispatcherUtils.serviceAction(DispatcherUtils.java:225)
        at com.opensymphony.webwork.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
        at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:199)
        at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:282)
        at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:767)
        at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:697)
        at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:889)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684)
        at java.lang.Thread.run(Thread.java:595)
Caused by: java.lang.SecurityException: A XACML policy denied acess to info:doi/10.1371/journal.pone.0000526
        at org.apache.axis.message.SOAPFaultBuilder.createFault(SOAPFaultBuilder.java:222)
        at org.apache.axis.message.SOAPFaultBuilder.endElement(SOAPFaultBuilder.java:129)
        at org.apache.axis.encoding.DeserializationContext.endElement(DeserializationContext.java:1087)
        at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.endElement(AbstractSAXParser.java:633)
        at com.sun.org.apache.xerces.internal.impl.XMLNSDocumentScannerImpl.scanEndElement(XMLNSDocumentScannerImpl.java:719)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(XMLDocumentFragmentScannerImpl.java:1685)
        at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:368)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:834)
        at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:764)
        at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:148)
        at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1242)
        at javax.xml.parsers.SAXParser.parse(SAXParser.java:375)
        at org.apache.axis.encoding.DeserializationContext.parse(DeserializationContext.java:227)
        at org.apache.axis.SOAPPart.getAsSOAPEnvelope(SOAPPart.java:696)
        at org.apache.axis.Message.getSOAPEnvelope(Message.java:435)
        at org.apache.axis.handlers.soap.MustUnderstandChecker.invoke(MustUnders
        at org.apache.axis.client.AxisClient.invoke(AxisClient.java:206)
        at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
        at org.apache.axis.client.Call.invoke(Call.java:2767)
        at org.apache.axis.client.Call.invoke(Call.java:2443)
        at org.apache.axis.client.Call.invoke(Call.java:2366)
        at org.apache.axis.client.Call.invoke(Call.java:1812)
        at org.topazproject.ws.article.ArticleServicePortSoapBindingStub.getObje
        at org.plos.article.service.ArticleWebService.getObjectURL(ArticleWebSer
        at org.plos.article.service.ArticleWebService$$FastClassByCGLIB$$c1438d0
        at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
        at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocatio
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.doP
        at org.springframework.aop.support.DelegatingIntroductionInterceptor.inv
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterc
        at org.plos.article.service.ArticleWebService$$EnhancerByCGLIB$$603d5683
        at org.plos.article.service.FetchArticleService.getAnnotatedContentAsDoc
        at org.plos.article.service.FetchArticleService.getAnnotatedContentAsDOM
        at org.plos.article.service.FetchArticleService.getTransformedArticle(Fe
        ... 72 more

as does topaz log: 

2007-06-25 14:44:42,032 INFO  DenyBiasedPEP> 'deny-inactive' denies 'anonymous:user/' to do 'articles:getObjectURL' on 'info:doi/10.1371/journal.pone.0000526' [http-8008-Processor25 org.topazproject.xacml.DenyBiasedPEP]
2007-06-25 14:44:42,032 INFO  ArticleServicePortSoapBindingImpl> method getObjectURL threw an exception [http-8008-Processor25 org.topazproject.ws.article.ArticleServicePortSoapBindingImpl]
java.lang.SecurityException: A XACML policy denied acess to info:doi/10.1371/journal.pone.0000526
        at org.topazproject.xacml.DenyBiasedPEP.evaluate(DenyBiasedPEP.java:148)
        at org.topazproject.xacml.AbstractSimplePEP.checkAccess(AbstractSimplePEP.java:127)
        at org.topazproject.xacml.AbstractSimplePEP.checkAccess(AbstractSimplePEP.java:143)
        at org.topazproject.ws.article.impl.ArticleImpl.getObjectURL(ArticleImpl.java:368)
        at sun.reflect.GeneratedMethodAccessor93.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.topazproject.common.ws.ImplInvocationHandler.invoke(ImplInvocationHandler.java:61)
        at $Proxy0.getObjectURL(Unknown Source)
        at org.topazproject.ws.article.ArticleServicePortSoapBindingImpl.getObjectURL(ArticleServicePortSoapBindingImpl.java:104)
        at sun.reflect.GeneratedMethodAccessor92.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.apache.axis.providers.java.RPCProvider.invokeMethod(RPCProvider.java:397)
        at org.apache.axis.providers.java.RPCProvider.processMessage(RPCProvider.java:186)
        at org.apache.axis.providers.java.JavaProvider.invoke(JavaProvider.java:323)
        at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
        at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
        at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
        at org.apache.axis.handlers.soap.SOAPService.invoke(SOAPService.java:454)
        at org.apache.axis.server.AxisServer.invoke(AxisServer.java:281)
        at org.apache.axis.transport.http.AxisServlet.doPost(AxisServlet.java:699)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:709)
        at org.apache.axis.transport.http.AxisServletBase.service(AxisServletBase.java:327)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
        at org.topazproject.ws.users.filter.UserAccountsFilter.doFilter(UserAccountsFilter.java:103)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
        at edu.yale.its.tp.cas.client.filter.CASValidateFilter.doFilter(CASValidateFilter.java:284)
        at org.topazproject.cas.client.filter.CASValidateFilterWrapper.doFilter(CASValidateFilterWrapper.java:70)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:202)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
        at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:869)
        at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:664)
        at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:527)
        at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:80)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:684)
        at java.lang.Thread.run(Thread.java:595)

i restarted the topaz service and all was well.

so i guess the xacml cache was out of date? didn't get updated on article publish?

let me know if i can help find the error on this. we need to be able to rely on articles being available on both stacks on publish.

Dependency Graph

Change History

06/25/07 18:59:01 changed by pradeep

Looks like the 'article-state' cache on ArticleService? was not invalidated. The primary suspect is a network/firewall config problem. That can be confirmed/refuted by enabling debug log for ehcache.

Also there is a newer ehCache release (1.3). See http://ehcache.sourceforge.net/changes-report.html It contains numerous bug fixes over the v1.2.3 that we use and also has JMX support. We'll switch to that in any case.

06/25/07 19:34:51 changed by amit

  • owner changed from pradeep to russ.
  • version set to 0.6.

This problem should get somewhat mitigated in 0.7. Was there any other change in network setup or anything?

(follow-up: ↓ 4 ) 06/26/07 11:25:36 changed by russ

no change in network setup.

is debug currently not configured for ehcache logging? i know we've seen ehcache network errors in the logs before...

let me know what i should look for!

(in reply to: ↑ 3 ) 06/26/07 14:58:30 changed by pradeep

Replying to russ:

no change in network setup.

Turning DEBUG on for net.sf.ehcache in topaz-1, topaz-2 and mulgara would tell you if there is any network config problem at all.

06/28/07 11:35:10 changed by amit

  • priority changed from critical to high.

06/28/07 11:44:04 changed by russ

let me know what i need to do to change the log levels (or point me to documentation) and i'll give it a try and monitor things for a bit.

06/28/07 12:02:34 changed by amit

  • owner changed from russ to amit.

Majority of this type of information can be found on the web for Log4J package. I will find couple of examples and update this and maybe add a Wiki page.

07/13/07 08:27:03 changed by russ

  • status changed from new to closed.
  • resolution set to wontfix.

08/07/07 16:25:51 changed by

  • milestone deleted.

Milestone Bugs deleted