plosone.log error.
how do i troubleshoot/trace back to root cause?
2008-02-27 05:02:06,384 ERROR ItqlStore(PLoSClinicalTrials)> Failed to close connection after rollback failure [TP-Processor136 org.topazproject.otm.stores.\
ItqlStore]
AxisFault
faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
faultSubcode:
faultString: java.net.ConnectException: Connection refused
faultActor:
faultNode:
faultDetail:
{http://xml.apache.org/axis/}stackTrace:java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
at java.net.Socket.connect(Socket.java:516)
at sun.reflect.GeneratedMethodAccessor35.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:153)
at org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:120)
at org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:191)
at org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:404)
at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:138)
at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at org.topazproject.mulgara.itql.service.ItqlInterpreterBeanServicePortSoapBindingStub.close(ItqlInterpreterBeanServicePortSoapBindingStub.java:238)
at org.topazproject.mulgara.itql.ItqlHelper.close(ItqlHelper.java:393)
at org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.abort(ItqlStore.java:917)
at org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.rollback(ItqlStore.java:901)
at org.topazproject.otm.Transaction.rollback(Transaction.java:85)
at org.topazproject.otm.util.TransactionHelper.doInTxE(TransactionHelper.java:112)
at org.plos.xacml.cond.OtmQueryFunction.executeQuery(OtmQueryFunction.java:71)
at org.plos.xacml.cond.DBQueryFunction.evaluate(DBQueryFunction.java:149)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
at org.plos.xacml.cond.CachedBagFunction.evaluate(CachedBagFunction.java:161)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
at com.sun.xacml.cond.FunctionBase.evalArgs(Unknown Source)
at com.sun.xacml.cond.GeneralBagFunction.evaluate(Unknown Source)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
at com.sun.xacml.cond.FunctionBase.evalArgs(Unknown Source)
at com.sun.xacml.cond.ComparisonFunction.evaluate(Unknown Source)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
at com.sun.xacml.cond.LogicalFunction.evaluate(Unknown Source)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
at com.sun.xacml.Rule.evaluate(Unknown Source)
at com.sun.xacml.combine.FirstApplicableRuleAlg.combine(Unknown Source)
at com.sun.xacml.AbstractPolicy.evaluate(Unknown Source)
at com.sun.xacml.PolicyReference.evaluate(Unknown Source)
at com.sun.xacml.combine.FirstApplicablePolicyAlg.combine(Unknown Source)
at com.sun.xacml.AbstractPolicy.evaluate(Unknown Source)
at com.sun.xacml.PDP.evaluateContext(Unknown Source)
at com.sun.xacml.PDP.evaluate(Unknown Source)
at org.plos.xacml.DenyBiasedPEP.evaluate(DenyBiasedPEP.java:120)
at org.plos.xacml.AbstractSimplePEP.checkAccess(AbstractSimplePEP.java:132)
at org.plos.xacml.AbstractSimplePEP.checkAccess(AbstractSimplePEP.java:148)
at org.plos.article.service.ArticleOtmService.getObjectInfo(ArticleOtmService.java:467)
at org.plos.article.service.ArticleOtmService$$FastClassByCGLIB$$45a772ae.invoke(<generated>)
at net.sf.cglib.proxy.MethodProxy.invoke(MethodProxy.java:149)
at org.springframework.aop.framework.Cglib2AopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib2AopProxy.java:695)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:144)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.doProceed(DelegatingIntroductionInterceptor.java:131)
at org.springframework.aop.support.DelegatingIntroductionInterceptor.invoke(DelegatingIntroductionInterceptor.java:119)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:166)
at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:630)
at org.plos.article.service.ArticleOtmService$$EnhancerByCGLIB$$5a59a63c.getObjectInfo(<generated>)
at org.plos.article.action.FetchObjectAction.fetchFirstObject(FetchObjectAction.java:63)
at sun.reflect.GeneratedMethodAccessor638.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:585)
at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:404)
at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:267)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:229)
at org.plos.user.EnsureUserAccountInterceptor.intercept(EnsureUserAccountInterceptor.java:50)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at org.plos.user.UserAccountsInterceptor.intercept(UserAccountsInterceptor.java:77)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at org.plos.journal.SessionFiltersInterceptor.intercept(SessionFiltersInterceptor.java:46)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:221)
at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:150)
at org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:48)
at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.intercept(ConversionErrorInterceptor.java:123)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:167)
at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:105)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:207)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:74)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
at org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:206)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
...
at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:773)
at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:895)
at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
at java.lang.Thread.run(Thread.java:595)
{http://xml.apache.org/axis/}hostname:plostopaz01.localdomain
java.net.ConnectException: Connection refused
at org.apache.axis.AxisFault.makeFault(AxisFault.java:101)
at org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:154)
at org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
at org.apache.axis.client.AxisClient.invoke(AxisClient.java:165)
at org.apache.axis.client.Call.invokeEngine(Call.java:2784)
at org.apache.axis.client.Call.invoke(Call.java:2767)
at org.apache.axis.client.Call.invoke(Call.java:2443)
at org.apache.axis.client.Call.invoke(Call.java:2366)
at org.apache.axis.client.Call.invoke(Call.java:1812)
at org.topazproject.mulgara.itql.service.ItqlInterpreterBeanServicePortSoapBindingStub.close(ItqlInterpreterBeanServicePortSoapBindingStub.java:238)
at org.topazproject.mulgara.itql.ItqlHelper.close(ItqlHelper.java:393)
at org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.abort(ItqlStore.java:917)
at org.topazproject.otm.stores.ItqlStore$ItqlStoreConnection.rollback(ItqlStore.java:901)
at org.topazproject.otm.Transaction.rollback(Transaction.java:85)
at org.topazproject.otm.util.TransactionHelper.doInTxE(TransactionHelper.java:112)
at org.plos.xacml.cond.OtmQueryFunction.executeQuery(OtmQueryFunction.java:71)
at org.plos.xacml.cond.DBQueryFunction.evaluate(DBQueryFunction.java:149)
at com.sun.xacml.cond.Apply.evaluate(Unknown Source)
...
at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:773)
at org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703)
at org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:895)
at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
at java.lang.Thread.run(Thread.java:595)
Caused by: java.net.ConnectException: Connection refused
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)