Ticket #958 (closed defect: fixed)

Opened 7 months ago

Last modified 7 months ago

other user's profile pages give a site error

Reported by: russ Assigned to: pradeep
Priority: high Milestone: 0.9.0
Component: ambra Version: 0.9-SNAPSHOT
Keywords: Cc:
Blocking: Blocked By:

Description

a user can view their own profile page (for example, clicking on the user profile link on a note i created)

but they cannot view profile pages of other users. nor can anonymous users view profile pages anymore. 

2008-06-09 17:37:07,555 INFO  LoggingInterceptor(PLoSONE)> Finishing execution stack for action /user/showUser [http-8080-Processor22 com.opensymphony.xwork2.interceptor.LoggingInterceptor]
2008-06-09 17:37:07,556 WARN  Preparer(PLoSONE)> executing transaction with 0 enlisted resource [http-8080-Processor22 bitronix.tm.twopc.Preparer]
2008-06-09 17:37:07,558 INFO  DenyBiasedPEP(PLoSONE)> 'permitted-anonymous-operations' permits 'anonymous:user/' to do 'userAccounts:lookUpUser' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,560 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getDisplayName' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,561 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getGivenNames' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,561 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getSurnames' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,562 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getTitle' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,563 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getPositionType' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,563 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getOrganizationName' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,564 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getOrganizationType' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,565 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getPostalAddress' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,566 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getCity' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,566 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getCountry' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,567 INFO  DenyBiasedPEP(PLoSONE)> 'deny-anonymous' denies 'anonymous:user/' to do 'profiles:getEmail' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,568 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getInterests' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,568 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getBiographyText' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,569 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getInterestsText' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,570 INFO  DenyBiasedPEP(PLoSONE)> 'permit-grants' permits 'anonymous:user/' to do 'profiles:getResearchAreasText' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,571 INFO  DenyBiasedPEP(PLoSONE)> 'deny-anonymous' denies 'anonymous:user/' to do 'preferences:getPreferences' on 'info:doi/10.1371/account/2abf9176-5dca-46c7-bca1-c7d4d6aaee18' [http-8080-Processor22 org.plos.xacml.DenyBiasedPEP]
2008-06-09 17:37:07,595 WARN  BitronixTransaction(PLoSONE)> Synchronization.beforeCompletion() call failed for org.topazproject.otm.impl.AbstractSession$1@7346b4, marking transaction as rollback only [http-8080-Processor22 bitronix.tm.BitronixTransaction]
org.topazproject.otm.OtmException: error performing update: delete select $s $p $o from <local:///topazproject#filter:model=profiles> where ($s $p $o and $s <mulgara:is> <info:doi/10.1371/profile/18ed3b53-4491-4c93-91b8-e0626584903b> and ($p <mulgara:is> <http://xmlns.com/foaf/0.1/mbox>) ) from <local:///topazproject#filter:model=profiles>;
        at org.topazproject.otm.stores.ItqlStore.delete(ItqlStore.java:275)
        at org.topazproject.otm.impl.SessionImpl.write(SessionImpl.java:520)
        at org.topazproject.otm.impl.SessionImpl.doFlush(SessionImpl.java:165)
        at org.topazproject.otm.impl.SessionImpl.flush(SessionImpl.java:135)
        at org.topazproject.otm.impl.AbstractSession$1.beforeCompletion(AbstractSession.java:358)
        at bitronix.tm.BitronixTransaction.fireBeforeCompletionEvent(BitronixTransaction.java:320)
        at bitronix.tm.BitronixTransaction.commit(BitronixTransaction.java:124)
        at org.topazproject.otm.impl.TransactionImpl.commit(TransactionImpl.java:87)
        at org.topazproject.otm.spring.OtmTransactionManager.doCommit(OtmTransactionManager.java:92)
        at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:662)
        at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:632)
        at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:314)
        at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:117)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:166)
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:630)
        at org.plos.user.action.DisplayUserAction$$EnhancerByCGLIB$$c0a21aad.execute(<generated>)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:404)
        at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:267)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:229)
        at org.plos.user.UserAccountsInterceptor.intercept(UserAccountsInterceptor.java:101)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.plos.journal.SessionFiltersInterceptor.intercept(SessionFiltersInterceptor.java:53)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:221)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:150)
        at org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:48)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.intercept(ConversionErrorInterceptor.java:123)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:167)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:105)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:207)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:74)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:206)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:143)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:121)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:170)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:123)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.LoggingInterceptor.intercept(LoggingInterceptor.java:52)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.TimerInterceptor.invokeUnderTiming(TimerInterceptor.java:125)
        at com.opensymphony.xwork2.interceptor.TimerInterceptor.intercept(TimerInterceptor.java:112)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:176)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:50)
        at org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:504)
        at org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:419)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.DummySSOFilter.doFilter(DummySSOFilter.java:105)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.VirtualJournalContextFilter.doFilter(VirtualJournalContextFilter.java:163)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164)
        at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141)
        at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90)
        at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.MultipleRequestFilter.doFilter(MultipleRequestFilter.java:95)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:151)
        at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
        at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
        at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
        at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
        at java.lang.Thread.run(Thread.java:595)
Caused by: java.io.IOException: Error running update 'delete select $s $p $o from <local:///topazproject#filter:model=profiles> where ($s $p $o and $s <mulgara:is> <info:doi/10.1371/profile/18ed3b53-4491-4c93-91b8-e0626584903b> and ($p <mulgara:is> <http://xmlns.com/foaf/0.1/mbox>) ) from <local:///topazproject#filter:model=profiles>;'
        at org.topazproject.mulgara.itql.TIClient.doUpdate(TIClient.java:109)
        at org.topazproject.otm.stores.ItqlStore.delete(ItqlStore.java:273)
        ... 145 more
Caused by: org.mulgara.query.QueryException: Unable to modify local:///topazproject#filter:model=profiles
        at org.mulgara.resolver.DatabaseSession.execute(DatabaseSession.java:647)
        at org.mulgara.resolver.DatabaseSession.modify(DatabaseSession.java:630)
        at org.mulgara.resolver.DatabaseSession.delete(DatabaseSession.java:346)
        at org.mulgara.server.rmi.SessionWrapperRemoteSession.delete(SessionWrapperRemoteSession.java:173)
        at sun.reflect.GeneratedMethodAccessor39.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:294)
        at sun.rmi.transport.Transport$1.run(Transport.java:153)
        at java.security.AccessController.doPrivileged(Native Method)
        at sun.rmi.transport.Transport.serviceCall(Transport.java:149)
        at sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:466)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:707)
        at java.lang.Thread.run(Thread.java:595)
        at sun.rmi.transport.StreamRemoteCall.exceptionReceivedFromServer(StreamRemoteCall.java:247)
        at sun.rmi.transport.StreamRemoteCall.executeCall(StreamRemoteCall.java:223)
        at sun.rmi.server.UnicastRef.invoke(UnicastRef.java:126)
        at org.mulgara.server.rmi.RemoteSessionImpl_Stub.delete(Unknown Source)
        at org.mulgara.server.rmi.RemoteSessionWrapperSession.delete(RemoteSessionWrapperSession.java:262)
        at org.mulgara.query.operation.Deletion.execute(Deletion.java:55)
        at org.topazproject.mulgara.itql.TIClient.doUpdate(TIClient.java:106)
        ... 146 more
Caused by: org.mulgara.query.QueryException: org.mulgara.query.MulgaraTransactionException: RO-transaction associated with session when requesting write operation
        at org.mulgara.resolver.MulgaraExternalTransactionFactory.getTransaction(MulgaraExternalTransactionFactory.java:75)
        at org.mulgara.resolver.DatabaseSession.execute(DatabaseSession.java:643)
        at org.mulgara.resolver.DatabaseSession.modify(DatabaseSession.java:630)
        at org.mulgara.resolver.DatabaseSession.delete(DatabaseSession.java:346)
        at org.mulgara.server.rmi.SessionWrapperRemoteSession.delete(SessionWrapperRemoteSession.java:173)
        at sun.reflect.GeneratedMethodAccessor39.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at sun.rmi.server.UnicastServerRef.dispatch(UnicastServerRef.java:294)
        at sun.rmi.transport.Transport$1.run(Transport.java:153)
        at java.security.AccessController.doPrivileged(Native Method)
        at sun.rmi.transport.Transport.serviceCall(Transport.java:149)
        at sun.rmi.transport.tcp.TCPTransport.handleMessages(TCPTransport.java:466)
        at sun.rmi.transport.tcp.TCPTransport$ConnectionHandler.run(TCPTransport.java:707)
        ... 1 more
2008-06-09 17:37:07,603 WARN  CacheManager(PLoSONE)> afterCompletion: called without acquiring the update-lock [http-8080-Processor22 org.plos.cache.CacheManager]
2008-06-09 17:37:07,604 ERROR UnhandledException(PLoSONE)> error committing transaction; nested exception is org.topazproject.otm.OtmException: Error committing transaction [http-8080-Processor22 org.plos.UnhandledException]
org.springframework.transaction.TransactionSystemException: error committing transaction; nested exception is org.topazproject.otm.OtmException: Error committing transaction
Caused by: org.topazproject.otm.OtmException: Error committing transaction
        at org.topazproject.otm.impl.TransactionImpl.commit(TransactionImpl.java:89)
        at org.topazproject.otm.spring.OtmTransactionManager.doCommit(OtmTransactionManager.java:92)
        at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:662)
        at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:632)
        at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:314)
        at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:117)
        at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:166)
        at org.springframework.aop.framework.Cglib2AopProxy$DynamicAdvisedInterceptor.intercept(Cglib2AopProxy.java:630)
        at org.plos.user.action.DisplayUserAction$$EnhancerByCGLIB$$c0a21aad.execute(<generated>)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:404)
        at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:267)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:229)
        at org.plos.user.UserAccountsInterceptor.intercept(UserAccountsInterceptor.java:101)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.plos.journal.SessionFiltersInterceptor.intercept(SessionFiltersInterceptor.java:53)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.DefaultWorkflowInterceptor.doIntercept(DefaultWorkflowInterceptor.java:221)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.validator.ValidationInterceptor.doIntercept(ValidationInterceptor.java:150)
        at org.apache.struts2.interceptor.validation.AnnotationValidationInterceptor.doIntercept(AnnotationValidationInterceptor.java:48)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ConversionErrorInterceptor.intercept(ConversionErrorInterceptor.java:123)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:167)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:105)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:207)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:74)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:206)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:143)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:121)
        at com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:86)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:170)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:123)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.LoggingInterceptor.intercept(LoggingInterceptor.java:52)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.TimerInterceptor.invokeUnderTiming(TimerInterceptor.java:125)
        at com.opensymphony.xwork2.interceptor.TimerInterceptor.intercept(TimerInterceptor.java:112)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:176)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:224)
        at com.opensymphony.xwork2.DefaultActionInvocation$2.doProfiling(DefaultActionInvocation.java:223)
        at com.opensymphony.xwork2.util.profiling.UtilTimerStack.profile(UtilTimerStack.java:455)
        at com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:221)
        at org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:50)
        at org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:504)
        at org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:419)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.DummySSOFilter.doFilter(DummySSOFilter.java:105)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.VirtualJournalContextFilter.doFilter(VirtualJournalContextFilter.java:163)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.tuckey.web.filters.urlrewrite.RuleChain.handleRewrite(RuleChain.java:164)
        at org.tuckey.web.filters.urlrewrite.RuleChain.doRules(RuleChain.java:141)
        at org.tuckey.web.filters.urlrewrite.UrlRewriter.processRequest(UrlRewriter.java:90)
        at org.tuckey.web.filters.urlrewrite.UrlRewriteFilter.doFilter(UrlRewriteFilter.java:406)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.plos.web.MultipleRequestFilter.doFilter(MultipleRequestFilter.java:95)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:215)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:174)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:108)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:151)
        at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:874)
        at org.apache.coyote.http11.Http11BaseProtocol$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java:665)
        at org.apache.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java:528)
        at org.apache.tomcat.util.net.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
        at org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:689)
        at java.lang.Thread.run(Thread.java:595)
Caused by: bitronix.tm.internal.BitronixRollbackException: transaction was marked as rollback only and has been rolled back
        at bitronix.tm.BitronixTransaction.commit(BitronixTransaction.java:135)
        at org.topazproject.otm.impl.TransactionImpl.commit(TransactionImpl.java:87)
        ... 138 more

Dependency Graph

Change History

06/09/08 19:15:49 changed by amit

  • owner changed from alex to pradeep.
  • priority changed from medium to high.

Looks like a write operation being performed on a read-only transaction.

06/09/08 19:56:58 changed by amit

I have a suspicion that it is also related to #910.

06/09/08 19:58:13 changed by amit

To be slightly clearer, I think it is related to the various fixes that went in for #910.

06/10/08 17:54:50 changed by pradeep

  • status changed from new to closed.
  • resolution set to fixed.

(In [5906]) evicted items are re-attached simply by being referenced by an attached object and save is set to cascade. In the case of UserAccount?, we do want the save to cascade. So evict in itself is not sufficient for the UserProfile? object. So now PlosOneUser? keeps a clone() of the UserProfile? object. It is safer, since PlosOneUser? now have no OTM persistable POJOs. Fixes #958. Also see #910.